fast.genomicscompare 6,575 genera of bacteria & archaea

 

Roseibium denhamense JCM 10543

Genome identifier: GCF_009711415.1

NCBI assembly name: ASM971141v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Stappiaceae, Roseibium, Roseibium denhamense

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Stappiaceae, Roseibium, Roseibium denhamense

Scaffolds: 116

Genes: 4,446 Protein-coding: 4,341 RNAs: 50 pseudogenes: 55

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SMLZ01000001.1 Roseibium denhamense strain JCM 10543 Contig_47, whole genome shotgun sequence 205
NZ_SMLZ01000002.1 Roseibium denhamense strain JCM 10543 Contig_169, whole genome shotgun sequence 207
NZ_SMLZ01000003.1 Roseibium denhamense strain JCM 10543 Contig_185, whole genome shotgun sequence 209
NZ_SMLZ01000004.1 Roseibium denhamense strain JCM 10543 Contig_121, whole genome shotgun sequence 218
NZ_SMLZ01000005.1 Roseibium denhamense strain JCM 10543 Contig_122, whole genome shotgun sequence 233
NZ_SMLZ01000006.1 Roseibium denhamense strain JCM 10543 Contig_48, whole genome shotgun sequence 233
NZ_SMLZ01000007.1 Roseibium denhamense strain JCM 10543 Contig_81, whole genome shotgun sequence 246
NZ_SMLZ01000008.1 Roseibium denhamense strain JCM 10543 Contig_104, whole genome shotgun sequence 255
NZ_SMLZ01000009.1 Roseibium denhamense strain JCM 10543 Contig_152, whole genome shotgun sequence 264
NZ_SMLZ01000010.1 Roseibium denhamense strain JCM 10543 Contig_94, whole genome shotgun sequence 268
NZ_SMLZ01000011.1 Roseibium denhamense strain JCM 10543 Contig_102, whole genome shotgun sequence 271
NZ_SMLZ01000012.1 Roseibium denhamense strain JCM 10543 Contig_76, whole genome shotgun sequence 273
NZ_SMLZ01000013.1 Roseibium denhamense strain JCM 10543 Contig_93, whole genome shotgun sequence 298
NZ_SMLZ01000014.1 Roseibium denhamense strain JCM 10543 Contig_150, whole genome shotgun sequence 302
NZ_SMLZ01000015.1 Roseibium denhamense strain JCM 10543 Contig_53, whole genome shotgun sequence 302
NZ_SMLZ01000016.1 Roseibium denhamense strain JCM 10543 Contig_186, whole genome shotgun sequence 310
NZ_SMLZ01000017.1 Roseibium denhamense strain JCM 10543 Contig_90, whole genome shotgun sequence 313
NZ_SMLZ01000018.1 Roseibium denhamense strain JCM 10543 Contig_124, whole genome shotgun sequence 327
NZ_SMLZ01000019.1 Roseibium denhamense strain JCM 10543 Contig_100, whole genome shotgun sequence 333
NZ_SMLZ01000020.1 Roseibium denhamense strain JCM 10543 Contig_151, whole genome shotgun sequence 339
NZ_SMLZ01000021.1 Roseibium denhamense strain JCM 10543 Contig_119, whole genome shotgun sequence 369
NZ_SMLZ01000022.1 Roseibium denhamense strain JCM 10543 Contig_140, whole genome shotgun sequence 373
NZ_SMLZ01000023.1 Roseibium denhamense strain JCM 10543 Contig_105, whole genome shotgun sequence 409
NZ_SMLZ01000024.1 Roseibium denhamense strain JCM 10543 Contig_111, whole genome shotgun sequence 411
NZ_SMLZ01000025.1 Roseibium denhamense strain JCM 10543 Contig_54, whole genome shotgun sequence 441
NZ_SMLZ01000026.1 Roseibium denhamense strain JCM 10543 Contig_127, whole genome shotgun sequence 482
NZ_SMLZ01000027.1 Roseibium denhamense strain JCM 10543 Contig_75, whole genome shotgun sequence 484
NZ_SMLZ01000028.1 Roseibium denhamense strain JCM 10543 Contig_184, whole genome shotgun sequence 492
NZ_SMLZ01000029.1 Roseibium denhamense strain JCM 10543 Contig_146, whole genome shotgun sequence 509
NZ_SMLZ01000030.1 Roseibium denhamense strain JCM 10543 Contig_95, whole genome shotgun sequence 517
NZ_SMLZ01000031.1 Roseibium denhamense strain JCM 10543 Contig_115, whole genome shotgun sequence 552
NZ_SMLZ01000032.1 Roseibium denhamense strain JCM 10543 Contig_99, whole genome shotgun sequence 566
NZ_SMLZ01000033.1 Roseibium denhamense strain JCM 10543 Contig_123, whole genome shotgun sequence 590
NZ_SMLZ01000034.1 Roseibium denhamense strain JCM 10543 Contig_143, whole genome shotgun sequence 605
NZ_SMLZ01000035.1 Roseibium denhamense strain JCM 10543 Contig_182, whole genome shotgun sequence 605
NZ_SMLZ01000036.1 Roseibium denhamense strain JCM 10543 Contig_57, whole genome shotgun sequence 627
NZ_SMLZ01000037.1 Roseibium denhamense strain JCM 10543 Contig_162, whole genome shotgun sequence 645
NZ_SMLZ01000038.1 Roseibium denhamense strain JCM 10543 Contig_192, whole genome shotgun sequence 645
NZ_SMLZ01000039.1 Roseibium denhamense strain JCM 10543 Contig_116, whole genome shotgun sequence 688
NZ_SMLZ01000040.1 Roseibium denhamense strain JCM 10543 Contig_183, whole genome shotgun sequence 689
NZ_SMLZ01000041.1 Roseibium denhamense strain JCM 10543 Contig_171, whole genome shotgun sequence 717
NZ_SMLZ01000042.1 Roseibium denhamense strain JCM 10543 Contig_109, whole genome shotgun sequence 727
NZ_SMLZ01000043.1 Roseibium denhamense strain JCM 10543 Contig_96, whole genome shotgun sequence 884
NZ_SMLZ01000044.1 Roseibium denhamense strain JCM 10543 Contig_108, whole genome shotgun sequence 913
NZ_SMLZ01000045.1 Roseibium denhamense strain JCM 10543 Contig_98, whole genome shotgun sequence 1,077
NZ_SMLZ01000046.1 Roseibium denhamense strain JCM 10543 Contig_149, whole genome shotgun sequence 1,087
NZ_SMLZ01000047.1 Roseibium denhamense strain JCM 10543 Contig_134, whole genome shotgun sequence 1,202
NZ_SMLZ01000048.1 Roseibium denhamense strain JCM 10543 Contig_82, whole genome shotgun sequence 1,451
NZ_SMLZ01000049.1 Roseibium denhamense strain JCM 10543 Contig_114, whole genome shotgun sequence 1,562
NZ_SMLZ01000050.1 Roseibium denhamense strain JCM 10543 Contig_80, whole genome shotgun sequence 1,655
NZ_SMLZ01000051.1 Roseibium denhamense strain JCM 10543 Contig_112, whole genome shotgun sequence 1,733
NZ_SMLZ01000052.1 Roseibium denhamense strain JCM 10543 Contig_29, whole genome shotgun sequence 2,560
NZ_SMLZ01000053.1 Roseibium denhamense strain JCM 10543 Contig_73, whole genome shotgun sequence 2,727
NZ_SMLZ01000054.1 Roseibium denhamense strain JCM 10543 Contig_62, whole genome shotgun sequence 2,986
NZ_SMLZ01000055.1 Roseibium denhamense strain JCM 10543 Contig_180, whole genome shotgun sequence 3,362
NZ_SMLZ01000056.1 Roseibium denhamense strain JCM 10543 Contig_147, whole genome shotgun sequence 3,376
NZ_SMLZ01000057.1 Roseibium denhamense strain JCM 10543 Contig_60, whole genome shotgun sequence 3,841
NZ_SMLZ01000058.1 Roseibium denhamense strain JCM 10543 Contig_49, whole genome shotgun sequence 4,496
NZ_SMLZ01000059.1 Roseibium denhamense strain JCM 10543 Contig_34, whole genome shotgun sequence 5,119
NZ_SMLZ01000060.1 Roseibium denhamense strain JCM 10543 Contig_188, whole genome shotgun sequence 5,910
NZ_SMLZ01000061.1 Roseibium denhamense strain JCM 10543 Contig_155, whole genome shotgun sequence 6,011
NZ_SMLZ01000062.1 Roseibium denhamense strain JCM 10543 Contig_6, whole genome shotgun sequence 6,584
NZ_SMLZ01000063.1 Roseibium denhamense strain JCM 10543 Contig_17, whole genome shotgun sequence 8,129
NZ_SMLZ01000064.1 Roseibium denhamense strain JCM 10543 Contig_65, whole genome shotgun sequence 8,982
NZ_SMLZ01000065.1 Roseibium denhamense strain JCM 10543 Contig_61, whole genome shotgun sequence 9,236
NZ_SMLZ01000066.1 Roseibium denhamense strain JCM 10543 Contig_39, whole genome shotgun sequence 9,264
NZ_SMLZ01000067.1 Roseibium denhamense strain JCM 10543 Contig_69, whole genome shotgun sequence 10,701
NZ_SMLZ01000068.1 Roseibium denhamense strain JCM 10543 Contig_37, whole genome shotgun sequence 11,755
NZ_SMLZ01000069.1 Roseibium denhamense strain JCM 10543 Contig_63, whole genome shotgun sequence 12,758
NZ_SMLZ01000070.1 Roseibium denhamense strain JCM 10543 Contig_154, whole genome shotgun sequence 12,877
NZ_SMLZ01000071.1 Roseibium denhamense strain JCM 10543 Contig_32, whole genome shotgun sequence 13,332
NZ_SMLZ01000072.1 Roseibium denhamense strain JCM 10543 Contig_11, whole genome shotgun sequence 16,306
NZ_SMLZ01000073.1 Roseibium denhamense strain JCM 10543 Contig_71, whole genome shotgun sequence 18,489
NZ_SMLZ01000074.1 Roseibium denhamense strain JCM 10543 Contig_2, whole genome shotgun sequence 21,752
NZ_SMLZ01000075.1 Roseibium denhamense strain JCM 10543 Contig_26, whole genome shotgun sequence 22,855
NZ_SMLZ01000076.1 Roseibium denhamense strain JCM 10543 Contig_31, whole genome shotgun sequence 23,470
NZ_SMLZ01000077.1 Roseibium denhamense strain JCM 10543 Contig_16, whole genome shotgun sequence 24,186
NZ_SMLZ01000078.1 Roseibium denhamense strain JCM 10543 Contig_120, whole genome shotgun sequence 26,760
NZ_SMLZ01000079.1 Roseibium denhamense strain JCM 10543 Contig_129, whole genome shotgun sequence 26,903
NZ_SMLZ01000080.1 Roseibium denhamense strain JCM 10543 Contig_35, whole genome shotgun sequence 28,198
NZ_SMLZ01000081.1 Roseibium denhamense strain JCM 10543 Contig_52, whole genome shotgun sequence 30,504
NZ_SMLZ01000082.1 Roseibium denhamense strain JCM 10543 Contig_59, whole genome shotgun sequence 32,393
NZ_SMLZ01000083.1 Roseibium denhamense strain JCM 10543 Contig_8, whole genome shotgun sequence 33,275
NZ_SMLZ01000084.1 Roseibium denhamense strain JCM 10543 Contig_19, whole genome shotgun sequence 34,225
NZ_SMLZ01000085.1 Roseibium denhamense strain JCM 10543 Contig_175, whole genome shotgun sequence 55,196
NZ_SMLZ01000086.1 Roseibium denhamense strain JCM 10543 Contig_24, whole genome shotgun sequence 55,456
NZ_SMLZ01000087.1 Roseibium denhamense strain JCM 10543 Contig_41, whole genome shotgun sequence 57,500
NZ_SMLZ01000088.1 Roseibium denhamense strain JCM 10543 Contig_15, whole genome shotgun sequence 59,299
NZ_SMLZ01000089.1 Roseibium denhamense strain JCM 10543 Contig_21, whole genome shotgun sequence 59,406
NZ_SMLZ01000090.1 Roseibium denhamense strain JCM 10543 Contig_64, whole genome shotgun sequence 59,480
NZ_SMLZ01000091.1 Roseibium denhamense strain JCM 10543 Contig_23, whole genome shotgun sequence 60,342
NZ_SMLZ01000092.1 Roseibium denhamense strain JCM 10543 Contig_27, whole genome shotgun sequence 62,837
NZ_SMLZ01000093.1 Roseibium denhamense strain JCM 10543 Contig_18, whole genome shotgun sequence 65,438
NZ_SMLZ01000094.1 Roseibium denhamense strain JCM 10543 Contig_181, whole genome shotgun sequence 68,106
NZ_SMLZ01000095.1 Roseibium denhamense strain JCM 10543 Contig_28, whole genome shotgun sequence 72,109
NZ_SMLZ01000096.1 Roseibium denhamense strain JCM 10543 Contig_38, whole genome shotgun sequence 73,808
NZ_SMLZ01000097.1 Roseibium denhamense strain JCM 10543 Contig_20, whole genome shotgun sequence 75,566
NZ_SMLZ01000098.1 Roseibium denhamense strain JCM 10543 Contig_159, whole genome shotgun sequence 78,882
NZ_SMLZ01000099.1 Roseibium denhamense strain JCM 10543 Contig_14, whole genome shotgun sequence 80,137
NZ_SMLZ01000100.1 Roseibium denhamense strain JCM 10543 Contig_9, whole genome shotgun sequence 96,068
NZ_SMLZ01000101.1 Roseibium denhamense strain JCM 10543 Contig_33, whole genome shotgun sequence 100,507
NZ_SMLZ01000102.1 Roseibium denhamense strain JCM 10543 Contig_5, whole genome shotgun sequence 101,874
NZ_SMLZ01000103.1 Roseibium denhamense strain JCM 10543 Contig_126, whole genome shotgun sequence 103,698
NZ_SMLZ01000104.1 Roseibium denhamense strain JCM 10543 Contig_13, whole genome shotgun sequence 111,783
NZ_SMLZ01000105.1 Roseibium denhamense strain JCM 10543 Contig_156, whole genome shotgun sequence 124,778
NZ_SMLZ01000106.1 Roseibium denhamense strain JCM 10543 Contig_167, whole genome shotgun sequence 149,670
NZ_SMLZ01000107.1 Roseibium denhamense strain JCM 10543 Contig_25, whole genome shotgun sequence 200,377
NZ_SMLZ01000108.1 Roseibium denhamense strain JCM 10543 Contig_103, whole genome shotgun sequence 214,081
NZ_SMLZ01000109.1 Roseibium denhamense strain JCM 10543 Contig_1, whole genome shotgun sequence 215,984
NZ_SMLZ01000110.1 Roseibium denhamense strain JCM 10543 Contig_30, whole genome shotgun sequence 216,904
NZ_SMLZ01000111.1 Roseibium denhamense strain JCM 10543 Contig_22, whole genome shotgun sequence 217,800
NZ_SMLZ01000112.1 Roseibium denhamense strain JCM 10543 Contig_7, whole genome shotgun sequence 237,732
NZ_SMLZ01000113.1 Roseibium denhamense strain JCM 10543 Contig_40, whole genome shotgun sequence 241,024
NZ_SMLZ01000114.1 Roseibium denhamense strain JCM 10543 Contig_12, whole genome shotgun sequence 249,522
NZ_SMLZ01000115.1 Roseibium denhamense strain JCM 10543 Contig_44, whole genome shotgun sequence 277,092
NZ_SMLZ01000116.1 Roseibium denhamense strain JCM 10543 Contig_170, whole genome shotgun sequence 451,487

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory