fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingomonas_M formosensis CC-Nfb-2

Genome identifier: GCF_009755815.1

NCBI assembly name: ASM975581v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas_M, Sphingomonas_M formosensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas, Sphingomonas formosensis

Scaffolds: 39

Genes: 6,414 Protein-coding: 6,280 RNAs: 59 pseudogenes: 75

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_WRPK01000001.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_1_length_1243671_cov_30.809840_cov_30.809840, whole genome shotgun sequence 1,243,671
NZ_WRPK01000002.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_2_length_739111_cov_30.273239_cov_30.273239, whole genome shotgun sequence 739,111
NZ_WRPK01000003.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_3_length_582208_cov_26.302963_cov_26.302963, whole genome shotgun sequence 582,208
NZ_WRPK01000004.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_4_length_529517_cov_28.261517_cov_28.261517, whole genome shotgun sequence 529,517
NZ_WRPK01000005.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_5_length_503530_cov_33.368984_cov_33.368984, whole genome shotgun sequence 503,530
NZ_WRPK01000006.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_6_length_412528_cov_34.096890_cov_34.096890, whole genome shotgun sequence 412,528
NZ_WRPK01000007.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_7_length_380913_cov_29.339781_cov_29.339781, whole genome shotgun sequence 380,913
NZ_WRPK01000008.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_8_length_352618_cov_30.732352_cov_30.732352, whole genome shotgun sequence 352,618
NZ_WRPK01000009.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_9_length_337305_cov_35.307473_cov_35.307473, whole genome shotgun sequence 337,305
NZ_WRPK01000010.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_10_length_320918_cov_27.425275_cov_27.425275, whole genome shotgun sequence 320,918
NZ_WRPK01000011.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_11_length_254959_cov_32.842771_cov_32.842771, whole genome shotgun sequence 254,959
NZ_WRPK01000012.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_12_length_223783_cov_28.209750_cov_28.209750, whole genome shotgun sequence 223,783
NZ_WRPK01000013.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_13_length_196319_cov_33.760981_cov_33.760981, whole genome shotgun sequence 196,319
NZ_WRPK01000014.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_14_length_170710_cov_26.660676_cov_26.660676, whole genome shotgun sequence 170,710
NZ_WRPK01000015.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_15_length_141287_cov_34.781116_cov_34.781116, whole genome shotgun sequence 141,287
NZ_WRPK01000016.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_17_length_81976_cov_35.108607_cov_35.108607, whole genome shotgun sequence 81,976
NZ_WRPK01000017.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_18_length_70863_cov_36.884524_cov_36.884524, whole genome shotgun sequence 70,863
NZ_WRPK01000018.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_19_length_64056_cov_34.581356_cov_34.581356, whole genome shotgun sequence 64,056
NZ_WRPK01000019.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_20_length_56517_cov_27.608323_cov_27.608323, whole genome shotgun sequence 56,517
NZ_WRPK01000020.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_21_length_55904_cov_34.636036_cov_34.636036, whole genome shotgun sequence 55,904
NZ_WRPK01000021.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_25_length_44476_cov_33.677804_cov_33.677804, whole genome shotgun sequence 44,476
NZ_WRPK01000022.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_27_length_39884_cov_25.483288_cov_25.483288, whole genome shotgun sequence 39,884
NZ_WRPK01000023.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_28_length_39244_cov_27.777037_cov_27.777037, whole genome shotgun sequence 39,244
NZ_WRPK01000024.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_112_length_12786_cov_35.907698_cov_35.907698, whole genome shotgun sequence 12,786
NZ_WRPK01000025.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_134_length_10825_cov_32.542975_cov_32.542975, whole genome shotgun sequence 10,825
NZ_WRPK01000026.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_211_length_7014_cov_30.831568_cov_30.831568, whole genome shotgun sequence 7,014
NZ_WRPK01000027.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_300_length_4279_cov_34.111111_cov_34.111111, whole genome shotgun sequence 4,279
NZ_WRPK01000028.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_347_length_3174_cov_85.956764_cov_85.956764, whole genome shotgun sequence 3,174
NZ_WRPK01000029.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_390_length_2322_cov_4.021354_cov_4.021354, whole genome shotgun sequence 2,322
NZ_WRPK01000030.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_392_length_2297_cov_3.554688_cov_3.554688, whole genome shotgun sequence 2,297
NZ_WRPK01000031.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_421_length_1907_cov_30.005039_cov_30.005039, whole genome shotgun sequence 1,907
NZ_WRPK01000032.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_424_length_1826_cov_59.920821_cov_59.920821, whole genome shotgun sequence 1,826
NZ_WRPK01000033.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_431_length_1616_cov_7.871572_cov_7.871572, whole genome shotgun sequence 1,616
NZ_WRPK01000034.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_432_length_1593_cov_84.147418_cov_84.147418, whole genome shotgun sequence 1,593
NZ_WRPK01000035.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_438_length_1524_cov_123.771205_cov_123.771205, whole genome shotgun sequence 1,524
NZ_WRPK01000036.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_448_length_1429_cov_69.861621_cov_69.861621, whole genome shotgun sequence 1,429
NZ_WRPK01000037.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_449_length_1424_cov_99.298542_cov_99.298542, whole genome shotgun sequence 1,424
NZ_WRPK01000038.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_453_length_1385_cov_177.622627_cov_177.622627, whole genome shotgun sequence 1,385
NZ_WRPK01000039.1 Sphingomonas formosensis strain CC-Nfb-2 NODE_454_length_1377_cov_85.071656_cov_85.071656, whole genome shotgun sequence 1,377

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory