fast.genomicscompare 6,575 genera of bacteria & archaea

 

Antarcticirhabdus aurantiaca R10

Genome identifier: GCF_009765365.1

NCBI assembly name: ASM976536v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Antarcticirhabdus, Antarcticirhabdus aurantiaca

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Aurantimonadaceae, Antarcticirhabdus, Antarcticirhabdus aurantiaca

Scaffolds: 65

Genes: 5,717 Protein-coding: 5,565 RNAs: 56 pseudogenes: 96

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VTOM01000001.1 Antarcticirhabdus aurantiaca strain R10 NODE_1, whole genome shotgun sequence 444,671
NZ_VTOM01000002.1 Antarcticirhabdus aurantiaca strain R10 NODE_2, whole genome shotgun sequence 351,639
NZ_VTOM01000003.1 Antarcticirhabdus aurantiaca strain R10 NODE_3, whole genome shotgun sequence 330,661
NZ_VTOM01000004.1 Antarcticirhabdus aurantiaca strain R10 NODE_4, whole genome shotgun sequence 324,607
NZ_VTOM01000005.1 Antarcticirhabdus aurantiaca strain R10 NODE_5, whole genome shotgun sequence 304,480
NZ_VTOM01000006.1 Antarcticirhabdus aurantiaca strain R10 NODE_6, whole genome shotgun sequence 292,246
NZ_VTOM01000007.1 Antarcticirhabdus aurantiaca strain R10 NODE_7, whole genome shotgun sequence 233,300
NZ_VTOM01000008.1 Antarcticirhabdus aurantiaca strain R10 NODE_8, whole genome shotgun sequence 231,811
NZ_VTOM01000009.1 Antarcticirhabdus aurantiaca strain R10 NODE_9, whole genome shotgun sequence 206,597
NZ_VTOM01000010.1 Antarcticirhabdus aurantiaca strain R10 NODE_10, whole genome shotgun sequence 188,347
NZ_VTOM01000011.1 Antarcticirhabdus aurantiaca strain R10 NODE_11, whole genome shotgun sequence 178,321
NZ_VTOM01000012.1 Antarcticirhabdus aurantiaca strain R10 NODE_12, whole genome shotgun sequence 172,500
NZ_VTOM01000013.1 Antarcticirhabdus aurantiaca strain R10 NODE_13, whole genome shotgun sequence 170,936
NZ_VTOM01000014.1 Antarcticirhabdus aurantiaca strain R10 NODE_14, whole genome shotgun sequence 165,679
NZ_VTOM01000015.1 Antarcticirhabdus aurantiaca strain R10 NODE_15, whole genome shotgun sequence 158,051
NZ_VTOM01000016.1 Antarcticirhabdus aurantiaca strain R10 NODE_16, whole genome shotgun sequence 145,591
NZ_VTOM01000017.1 Antarcticirhabdus aurantiaca strain R10 NODE_17, whole genome shotgun sequence 145,349
NZ_VTOM01000018.1 Antarcticirhabdus aurantiaca strain R10 NODE_18, whole genome shotgun sequence 134,651
NZ_VTOM01000019.1 Antarcticirhabdus aurantiaca strain R10 NODE_19, whole genome shotgun sequence 131,373
NZ_VTOM01000020.1 Antarcticirhabdus aurantiaca strain R10 NODE_20, whole genome shotgun sequence 119,171
NZ_VTOM01000021.1 Antarcticirhabdus aurantiaca strain R10 NODE_21, whole genome shotgun sequence 117,363
NZ_VTOM01000022.1 Antarcticirhabdus aurantiaca strain R10 NODE_22, whole genome shotgun sequence 108,144
NZ_VTOM01000023.1 Antarcticirhabdus aurantiaca strain R10 NODE_23, whole genome shotgun sequence 104,258
NZ_VTOM01000024.1 Antarcticirhabdus aurantiaca strain R10 NODE_24, whole genome shotgun sequence 101,956
NZ_VTOM01000025.1 Antarcticirhabdus aurantiaca strain R10 NODE_25, whole genome shotgun sequence 99,916
NZ_VTOM01000026.1 Antarcticirhabdus aurantiaca strain R10 NODE_26, whole genome shotgun sequence 97,452
NZ_VTOM01000027.1 Antarcticirhabdus aurantiaca strain R10 NODE_27, whole genome shotgun sequence 84,586
NZ_VTOM01000028.1 Antarcticirhabdus aurantiaca strain R10 NODE_28, whole genome shotgun sequence 77,497
NZ_VTOM01000029.1 Antarcticirhabdus aurantiaca strain R10 NODE_29, whole genome shotgun sequence 76,247
NZ_VTOM01000030.1 Antarcticirhabdus aurantiaca strain R10 NODE_30, whole genome shotgun sequence 75,098
NZ_VTOM01000031.1 Antarcticirhabdus aurantiaca strain R10 NODE_31, whole genome shotgun sequence 72,539
NZ_VTOM01000032.1 Antarcticirhabdus aurantiaca strain R10 NODE_32, whole genome shotgun sequence 60,797
NZ_VTOM01000033.1 Antarcticirhabdus aurantiaca strain R10 NODE_33, whole genome shotgun sequence 57,880
NZ_VTOM01000034.1 Antarcticirhabdus aurantiaca strain R10 NODE_34, whole genome shotgun sequence 52,186
NZ_VTOM01000035.1 Antarcticirhabdus aurantiaca strain R10 NODE_35, whole genome shotgun sequence 46,090
NZ_VTOM01000036.1 Antarcticirhabdus aurantiaca strain R10 NODE_36, whole genome shotgun sequence 30,501
NZ_VTOM01000037.1 Antarcticirhabdus aurantiaca strain R10 NODE_37, whole genome shotgun sequence 28,910
NZ_VTOM01000038.1 Antarcticirhabdus aurantiaca strain R10 NODE_38, whole genome shotgun sequence 26,084
NZ_VTOM01000039.1 Antarcticirhabdus aurantiaca strain R10 NODE_39, whole genome shotgun sequence 24,463
NZ_VTOM01000040.1 Antarcticirhabdus aurantiaca strain R10 NODE_40, whole genome shotgun sequence 20,900
NZ_VTOM01000041.1 Antarcticirhabdus aurantiaca strain R10 NODE_41, whole genome shotgun sequence 18,486
NZ_VTOM01000042.1 Antarcticirhabdus aurantiaca strain R10 NODE_42, whole genome shotgun sequence 17,033
NZ_VTOM01000043.1 Antarcticirhabdus aurantiaca strain R10 NODE_43, whole genome shotgun sequence 15,780
NZ_VTOM01000044.1 Antarcticirhabdus aurantiaca strain R10 NODE_44, whole genome shotgun sequence 13,920
NZ_VTOM01000045.1 Antarcticirhabdus aurantiaca strain R10 NODE_45, whole genome shotgun sequence 8,732
NZ_VTOM01000046.1 Antarcticirhabdus aurantiaca strain R10 NODE_46, whole genome shotgun sequence 6,506
NZ_VTOM01000047.1 Antarcticirhabdus aurantiaca strain R10 NODE_47, whole genome shotgun sequence 6,084
NZ_VTOM01000048.1 Antarcticirhabdus aurantiaca strain R10 NODE_48, whole genome shotgun sequence 6,082
NZ_VTOM01000049.1 Antarcticirhabdus aurantiaca strain R10 NODE_49, whole genome shotgun sequence 5,717
NZ_VTOM01000050.1 Antarcticirhabdus aurantiaca strain R10 NODE_50, whole genome shotgun sequence 2,886
NZ_VTOM01000051.1 Antarcticirhabdus aurantiaca strain R10 NODE_51, whole genome shotgun sequence 2,885
NZ_VTOM01000052.1 Antarcticirhabdus aurantiaca strain R10 NODE_52, whole genome shotgun sequence 2,270
NZ_VTOM01000053.1 Antarcticirhabdus aurantiaca strain R10 NODE_53, whole genome shotgun sequence 2,074
NZ_VTOM01000054.1 Antarcticirhabdus aurantiaca strain R10 NODE_54, whole genome shotgun sequence 1,870
NZ_VTOM01000055.1 Antarcticirhabdus aurantiaca strain R10 NODE_55, whole genome shotgun sequence 1,570
NZ_VTOM01000056.1 Antarcticirhabdus aurantiaca strain R10 NODE_56, whole genome shotgun sequence 1,474
NZ_VTOM01000057.1 Antarcticirhabdus aurantiaca strain R10 NODE_57, whole genome shotgun sequence 1,428
NZ_VTOM01000058.1 Antarcticirhabdus aurantiaca strain R10 NODE_58, whole genome shotgun sequence 1,396
NZ_VTOM01000059.1 Antarcticirhabdus aurantiaca strain R10 NODE_59, whole genome shotgun sequence 1,365
NZ_VTOM01000060.1 Antarcticirhabdus aurantiaca strain R10 NODE_60, whole genome shotgun sequence 1,021
NZ_VTOM01000061.1 Antarcticirhabdus aurantiaca strain R10 NODE_61, whole genome shotgun sequence 982
NZ_VTOM01000062.1 Antarcticirhabdus aurantiaca strain R10 NODE_62, whole genome shotgun sequence 953
NZ_VTOM01000063.1 Antarcticirhabdus aurantiaca strain R10 NODE_63, whole genome shotgun sequence 926
NZ_VTOM01000064.1 Antarcticirhabdus aurantiaca strain R10 NODE_64, whole genome shotgun sequence 618
NZ_VTOM01000065.1 Antarcticirhabdus aurantiaca strain R10 NODE_65, whole genome shotgun sequence 602

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory