fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pelagerythrobacter marinus H32

Genome identifier: GCF_009827515.1

NCBI assembly name: ASM982751v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Pelagerythrobacter, Pelagerythrobacter marinus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Erythrobacteraceae, Pelagerythrobacter, Pelagerythrobacter marinus

Scaffolds: 16

Genes: 2,926 Protein-coding: 2,832 RNAs: 53 pseudogenes: 41

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_WTYO01000001.1 Pelagerythrobacter marinus strain H32 NODE_1_length_771162, whole genome shotgun sequence 771,162
NZ_WTYO01000002.1 Pelagerythrobacter marinus strain H32 NODE_2_length_678872, whole genome shotgun sequence 678,872
NZ_WTYO01000003.1 Pelagerythrobacter marinus strain H32 NODE_3_length_493062, whole genome shotgun sequence 493,062
NZ_WTYO01000004.1 Pelagerythrobacter marinus strain H32 NODE_4_length_332887, whole genome shotgun sequence 332,887
NZ_WTYO01000005.1 Pelagerythrobacter marinus strain H32 NODE_5_length_269731, whole genome shotgun sequence 269,731
NZ_WTYO01000006.1 Pelagerythrobacter marinus strain H32 NODE_6_length_150615, whole genome shotgun sequence 150,615
NZ_WTYO01000007.1 Pelagerythrobacter marinus strain H32 NODE_7_length_119986, whole genome shotgun sequence 119,986
NZ_WTYO01000008.1 Pelagerythrobacter marinus strain H32 NODE_8_length_66450, whole genome shotgun sequence 66,450
NZ_WTYO01000009.1 Pelagerythrobacter marinus strain H32 NODE_9_length_43494, whole genome shotgun sequence 43,494
NZ_WTYO01000010.1 Pelagerythrobacter marinus strain H32 NODE_10_length_21385, whole genome shotgun sequence 21,385
NZ_WTYO01000011.1 Pelagerythrobacter marinus strain H32 NODE_11_length_16679, whole genome shotgun sequence 16,679
NZ_WTYO01000012.1 Pelagerythrobacter marinus strain H32 NODE_12_length_11019, whole genome shotgun sequence 11,019
NZ_WTYO01000013.1 Pelagerythrobacter marinus strain H32 NODE_13_length_10095, whole genome shotgun sequence 10,095
NZ_WTYO01000014.1 Pelagerythrobacter marinus strain H32 NODE_14_length_7107, whole genome shotgun sequence 7,107
NZ_WTYO01000015.1 Pelagerythrobacter marinus strain H32 NODE_15_length_6508, whole genome shotgun sequence 6,508
NZ_WTYO01000016.1 Pelagerythrobacter marinus strain H32 NODE_16_length_2413, whole genome shotgun sequence 2,413

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory