fast.genomicscompare 6,575 genera of bacteria & archaea

 

Altererythrobacter_F oceanensis MCCC 1A09965

Genome identifier: GCF_009827535.1

NCBI assembly name: ASM982753v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Altererythrobacter_F, Altererythrobacter_F oceanensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Erythrobacteraceae, Qipengyuania, Qipengyuania oceanensis

Scaffolds: 14

Genes: 2,845 Protein-coding: 2,784 RNAs: 52 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_WTYN01000001.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_1_length_2172364, whole genome shotgun sequence 2,172,364
NZ_WTYN01000002.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_2_length_232205, whole genome shotgun sequence 232,205
NZ_WTYN01000003.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_3_length_154413, whole genome shotgun sequence 154,413
NZ_WTYN01000004.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_4_length_107583, whole genome shotgun sequence 107,583
NZ_WTYN01000005.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_5_length_72279, whole genome shotgun sequence 72,279
NZ_WTYN01000006.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_6_length_71256, whole genome shotgun sequence 71,256
NZ_WTYN01000007.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_7_length_30069, whole genome shotgun sequence 30,069
NZ_WTYN01000008.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_8_length_10784, whole genome shotgun sequence 10,784
NZ_WTYN01000009.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_9_length_8265, whole genome shotgun sequence 8,265
NZ_WTYN01000010.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_10_length_4687, whole genome shotgun sequence 4,687
NZ_WTYN01000011.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_11_length_3494, whole genome shotgun sequence 3,494
NZ_WTYN01000012.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_12_length_2604, whole genome shotgun sequence 2,604
NZ_WTYN01000013.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_13_length_2184, whole genome shotgun sequence 2,184
NZ_WTYN01000014.1 Qipengyuania oceanensis strain MCCC 1A09965 NODE_14_length_2011, whole genome shotgun sequence 2,011

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory