fast.genomicscompare 6,575 genera of bacteria & archaea

 

Allopontixanthobacter confluentis KCTC 52259

Genome identifier: GCF_009827615.1

NCBI assembly name: ASM982761v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Allopontixanthobacter, Allopontixanthobacter confluentis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Erythrobacteraceae, Allopontixanthobacter, Allopontixanthobacter confluentis

Scaffolds: 4

Genes: 2,788 Protein-coding: 2,713 RNAs: 56 pseudogenes: 19

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_WTYU01000001.1 Allopontixanthobacter confluentis strain KCTC 52259 NODE_1_length_1771036, whole genome shotgun sequence 1,771,036
NZ_WTYU01000002.1 Allopontixanthobacter confluentis strain KCTC 52259 NODE_2_length_1147061, whole genome shotgun sequence 1,147,061
NZ_WTYU01000003.1 Allopontixanthobacter confluentis strain KCTC 52259 NODE_3_length_13886, whole genome shotgun sequence 13,886
NZ_WTYU01000004.1 Allopontixanthobacter confluentis strain KCTC 52259 NODE_4_length_2214, whole genome shotgun sequence 2,214

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory