fast.genomicscompare 6,575 genera of bacteria & archaea

 

Oceanomicrobium pacificus KN286

Genome identifier: GCF_009833495.1

NCBI assembly name: ASM983349v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Oceanomicrobium, Oceanomicrobium pacificus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Oceanomicrobium, Oceanomicrobium pacificus

Scaffolds: 10

Genes: 3,161 Protein-coding: 3,095 RNAs: 55 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_WUWG01000001.1 Oceanomicrobium pacificus strain KN286 Scaffold1_1, whole genome shotgun sequence 1,228,696
NZ_WUWG01000002.1 Oceanomicrobium pacificus strain KN286 Scaffold2_1, whole genome shotgun sequence 108,396
NZ_WUWG01000003.1 Oceanomicrobium pacificus strain KN286 Scaffold2_2, whole genome shotgun sequence 1,009,265
NZ_WUWG01000004.1 Oceanomicrobium pacificus strain KN286 Scaffold3_1, whole genome shotgun sequence 8,891
NZ_WUWG01000005.1 Oceanomicrobium pacificus strain KN286 Scaffold3_2, whole genome shotgun sequence 311,285
NZ_WUWG01000006.1 Oceanomicrobium pacificus strain KN286 Scaffold4_1, whole genome shotgun sequence 232,179
NZ_WUWG01000007.1 Oceanomicrobium pacificus strain KN286 Scaffold5_1, whole genome shotgun sequence 206,416
NZ_WUWG01000008.1 Oceanomicrobium pacificus strain KN286 Scaffold6_1, whole genome shotgun sequence 127,179
NZ_WUWG01000009.1 Oceanomicrobium pacificus strain KN286 Scaffold7_1, whole genome shotgun sequence 17,505
NZ_WUWG01000010.1 Oceanomicrobium pacificus strain KN286 Scaffold8_1, whole genome shotgun sequence 5,646

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory