fast.genomicscompare 6,575 genera of bacteria & archaea

 

Profundibacterium mesophilum KAUST100406-0324

Genome identifier: GCF_009835145.1

NCBI assembly name: ASM983514v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Profundibacterium, Profundibacterium mesophilum

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Profundibacterium, Profundibacterium mesophilum

Scaffolds: 130

Genes: 3,332 Protein-coding: 3,220 RNAs: 52 pseudogenes: 60

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_APKE01000001.1 Profundibacterium mesophilum KAUST100406-0324 Contig1, whole genome shotgun sequence 169,155
NZ_APKE01000002.1 Profundibacterium mesophilum KAUST100406-0324 Contig2, whole genome shotgun sequence 39,746
NZ_APKE01000003.1 Profundibacterium mesophilum KAUST100406-0324 Contig3, whole genome shotgun sequence 54,717
NZ_APKE01000004.1 Profundibacterium mesophilum KAUST100406-0324 Contig4, whole genome shotgun sequence 67,444
NZ_APKE01000005.1 Profundibacterium mesophilum KAUST100406-0324 Contig5, whole genome shotgun sequence 74,038
NZ_APKE01000006.1 Profundibacterium mesophilum KAUST100406-0324 Contig6, whole genome shotgun sequence 35,832
NZ_APKE01000007.1 Profundibacterium mesophilum KAUST100406-0324 Contig7, whole genome shotgun sequence 134,736
NZ_APKE01000008.1 Profundibacterium mesophilum KAUST100406-0324 Contig8, whole genome shotgun sequence 13,770
NZ_APKE01000009.1 Profundibacterium mesophilum KAUST100406-0324 Contig9, whole genome shotgun sequence 43,576
NZ_APKE01000010.1 Profundibacterium mesophilum KAUST100406-0324 Contig10, whole genome shotgun sequence 246,885
NZ_APKE01000011.1 Profundibacterium mesophilum KAUST100406-0324 Contig11, whole genome shotgun sequence 79,826
NZ_APKE01000012.1 Profundibacterium mesophilum KAUST100406-0324 Contig12, whole genome shotgun sequence 20,805
NZ_APKE01000013.1 Profundibacterium mesophilum KAUST100406-0324 Contig13, whole genome shotgun sequence 81,695
NZ_APKE01000014.1 Profundibacterium mesophilum KAUST100406-0324 Contig14, whole genome shotgun sequence 380,610
NZ_APKE01000015.1 Profundibacterium mesophilum KAUST100406-0324 Contig15, whole genome shotgun sequence 65,338
NZ_APKE01000016.1 Profundibacterium mesophilum KAUST100406-0324 Contig16, whole genome shotgun sequence 94,265
NZ_APKE01000017.1 Profundibacterium mesophilum KAUST100406-0324 Contig17, whole genome shotgun sequence 11,441
NZ_APKE01000018.1 Profundibacterium mesophilum KAUST100406-0324 Contig18, whole genome shotgun sequence 21,846
NZ_APKE01000019.1 Profundibacterium mesophilum KAUST100406-0324 Contig19, whole genome shotgun sequence 97,368
NZ_APKE01000020.1 Profundibacterium mesophilum KAUST100406-0324 Contig20, whole genome shotgun sequence 110,136
NZ_APKE01000021.1 Profundibacterium mesophilum KAUST100406-0324 Contig21, whole genome shotgun sequence 41,309
NZ_APKE01000022.1 Profundibacterium mesophilum KAUST100406-0324 Contig22, whole genome shotgun sequence 172,803
NZ_APKE01000023.1 Profundibacterium mesophilum KAUST100406-0324 Contig23, whole genome shotgun sequence 81,980
NZ_APKE01000024.1 Profundibacterium mesophilum KAUST100406-0324 Contig24, whole genome shotgun sequence 47,514
NZ_APKE01000025.1 Profundibacterium mesophilum KAUST100406-0324 Contig25, whole genome shotgun sequence 94,568
NZ_APKE01000026.1 Profundibacterium mesophilum KAUST100406-0324 Contig26, whole genome shotgun sequence 174,474
NZ_APKE01000027.1 Profundibacterium mesophilum KAUST100406-0324 Contig27, whole genome shotgun sequence 75,640
NZ_APKE01000028.1 Profundibacterium mesophilum KAUST100406-0324 Contig28, whole genome shotgun sequence 69,077
NZ_APKE01000029.1 Profundibacterium mesophilum KAUST100406-0324 Contig29, whole genome shotgun sequence 35,986
NZ_APKE01000030.1 Profundibacterium mesophilum KAUST100406-0324 Contig30, whole genome shotgun sequence 19,789
NZ_APKE01000031.1 Profundibacterium mesophilum KAUST100406-0324 Contig31, whole genome shotgun sequence 19,853
NZ_APKE01000032.1 Profundibacterium mesophilum KAUST100406-0324 Contig32, whole genome shotgun sequence 29,275
NZ_APKE01000033.1 Profundibacterium mesophilum KAUST100406-0324 Contig33, whole genome shotgun sequence 145,007
NZ_APKE01000034.1 Profundibacterium mesophilum KAUST100406-0324 Contig34, whole genome shotgun sequence 32,843
NZ_APKE01000035.1 Profundibacterium mesophilum KAUST100406-0324 Contig35, whole genome shotgun sequence 161,156
NZ_APKE01000036.1 Profundibacterium mesophilum KAUST100406-0324 Contig36, whole genome shotgun sequence 148,319
NZ_APKE01000037.1 Profundibacterium mesophilum KAUST100406-0324 Contig37, whole genome shotgun sequence 61,369
NZ_APKE01000038.1 Profundibacterium mesophilum KAUST100406-0324 Contig38, whole genome shotgun sequence 9,357
NZ_APKE01000039.1 Profundibacterium mesophilum KAUST100406-0324 Contig39, whole genome shotgun sequence 8,988
NZ_APKE01000040.1 Profundibacterium mesophilum KAUST100406-0324 Contig40, whole genome shotgun sequence 7,664
NZ_APKE01000041.1 Profundibacterium mesophilum KAUST100406-0324 Contig41, whole genome shotgun sequence 6,244
NZ_APKE01000042.1 Profundibacterium mesophilum KAUST100406-0324 Contig42, whole genome shotgun sequence 702
NZ_APKE01000043.1 Profundibacterium mesophilum KAUST100406-0324 Contig43, whole genome shotgun sequence 6,638
NZ_APKE01000044.1 Profundibacterium mesophilum KAUST100406-0324 Contig44, whole genome shotgun sequence 6,329
NZ_APKE01000045.1 Profundibacterium mesophilum KAUST100406-0324 Contig45, whole genome shotgun sequence 6,117
NZ_APKE01000046.1 Profundibacterium mesophilum KAUST100406-0324 Contig46, whole genome shotgun sequence 5,675
NZ_APKE01000047.1 Profundibacterium mesophilum KAUST100406-0324 Contig47, whole genome shotgun sequence 5,496
NZ_APKE01000048.1 Profundibacterium mesophilum KAUST100406-0324 Contig48, whole genome shotgun sequence 4,669
NZ_APKE01000049.1 Profundibacterium mesophilum KAUST100406-0324 Contig49, whole genome shotgun sequence 4,463
NZ_APKE01000050.1 Profundibacterium mesophilum KAUST100406-0324 Contig50, whole genome shotgun sequence 3,245
NZ_APKE01000051.1 Profundibacterium mesophilum KAUST100406-0324 Contig51, whole genome shotgun sequence 3,140
NZ_APKE01000052.1 Profundibacterium mesophilum KAUST100406-0324 Contig52, whole genome shotgun sequence 2,522
NZ_APKE01000053.1 Profundibacterium mesophilum KAUST100406-0324 Contig53, whole genome shotgun sequence 2,482
NZ_APKE01000054.1 Profundibacterium mesophilum KAUST100406-0324 Contig54, whole genome shotgun sequence 2,458
NZ_APKE01000055.1 Profundibacterium mesophilum KAUST100406-0324 Contig55, whole genome shotgun sequence 2,198
NZ_APKE01000056.1 Profundibacterium mesophilum KAUST100406-0324 Contig56, whole genome shotgun sequence 1,206
NZ_APKE01000057.1 Profundibacterium mesophilum KAUST100406-0324 Contig57, whole genome shotgun sequence 959
NZ_APKE01000058.1 Profundibacterium mesophilum KAUST100406-0324 Contig58, whole genome shotgun sequence 2,063
NZ_APKE01000059.1 Profundibacterium mesophilum KAUST100406-0324 Contig59, whole genome shotgun sequence 867
NZ_APKE01000060.1 Profundibacterium mesophilum KAUST100406-0324 Contig60, whole genome shotgun sequence 1,121
NZ_APKE01000061.1 Profundibacterium mesophilum KAUST100406-0324 Contig61, whole genome shotgun sequence 1,705
NZ_APKE01000062.1 Profundibacterium mesophilum KAUST100406-0324 Contig62, whole genome shotgun sequence 1,560
NZ_APKE01000063.1 Profundibacterium mesophilum KAUST100406-0324 Contig63, whole genome shotgun sequence 1,537
NZ_APKE01000064.1 Profundibacterium mesophilum KAUST100406-0324 Contig64, whole genome shotgun sequence 1,412
NZ_APKE01000065.1 Profundibacterium mesophilum KAUST100406-0324 Contig65, whole genome shotgun sequence 1,401
NZ_APKE01000066.1 Profundibacterium mesophilum KAUST100406-0324 Contig66, whole genome shotgun sequence 1,369
NZ_APKE01000067.1 Profundibacterium mesophilum KAUST100406-0324 Contig67, whole genome shotgun sequence 1,390
NZ_APKE01000068.1 Profundibacterium mesophilum KAUST100406-0324 Contig68, whole genome shotgun sequence 1,290
NZ_APKE01000069.1 Profundibacterium mesophilum KAUST100406-0324 Contig69, whole genome shotgun sequence 1,190
NZ_APKE01000070.1 Profundibacterium mesophilum KAUST100406-0324 Contig70, whole genome shotgun sequence 1,178
NZ_APKE01000071.1 Profundibacterium mesophilum KAUST100406-0324 Contig71, whole genome shotgun sequence 1,136
NZ_APKE01000072.1 Profundibacterium mesophilum KAUST100406-0324 Contig72, whole genome shotgun sequence 1,018
NZ_APKE01000073.1 Profundibacterium mesophilum KAUST100406-0324 Contig73, whole genome shotgun sequence 280
NZ_APKE01000074.1 Profundibacterium mesophilum KAUST100406-0324 Contig74, whole genome shotgun sequence 696
NZ_APKE01000075.1 Profundibacterium mesophilum KAUST100406-0324 Contig75, whole genome shotgun sequence 943
NZ_APKE01000076.1 Profundibacterium mesophilum KAUST100406-0324 Contig76, whole genome shotgun sequence 856
NZ_APKE01000077.1 Profundibacterium mesophilum KAUST100406-0324 Contig77, whole genome shotgun sequence 855
NZ_APKE01000078.1 Profundibacterium mesophilum KAUST100406-0324 Contig78, whole genome shotgun sequence 903
NZ_APKE01000079.1 Profundibacterium mesophilum KAUST100406-0324 Contig79, whole genome shotgun sequence 872
NZ_APKE01000080.1 Profundibacterium mesophilum KAUST100406-0324 Contig80, whole genome shotgun sequence 855
NZ_APKE01000081.1 Profundibacterium mesophilum KAUST100406-0324 Contig81, whole genome shotgun sequence 777
NZ_APKE01000082.1 Profundibacterium mesophilum KAUST100406-0324 Contig82, whole genome shotgun sequence 721
NZ_APKE01000083.1 Profundibacterium mesophilum KAUST100406-0324 Contig83, whole genome shotgun sequence 699
NZ_APKE01000084.1 Profundibacterium mesophilum KAUST100406-0324 Contig84, whole genome shotgun sequence 636
NZ_APKE01000085.1 Profundibacterium mesophilum KAUST100406-0324 Contig85, whole genome shotgun sequence 621
NZ_APKE01000086.1 Profundibacterium mesophilum KAUST100406-0324 Contig86, whole genome shotgun sequence 605
NZ_APKE01000087.1 Profundibacterium mesophilum KAUST100406-0324 Contig87, whole genome shotgun sequence 593
NZ_APKE01000088.1 Profundibacterium mesophilum KAUST100406-0324 Contig88, whole genome shotgun sequence 315
NZ_APKE01000089.1 Profundibacterium mesophilum KAUST100406-0324 Contig89, whole genome shotgun sequence 253
NZ_APKE01000090.1 Profundibacterium mesophilum KAUST100406-0324 Contig90, whole genome shotgun sequence 488
NZ_APKE01000091.1 Profundibacterium mesophilum KAUST100406-0324 Contig91, whole genome shotgun sequence 488
NZ_APKE01000092.1 Profundibacterium mesophilum KAUST100406-0324 Contig92, whole genome shotgun sequence 425
NZ_APKE01000093.1 Profundibacterium mesophilum KAUST100406-0324 Contig93, whole genome shotgun sequence 414
NZ_APKE01000094.1 Profundibacterium mesophilum KAUST100406-0324 Contig94, whole genome shotgun sequence 399
NZ_APKE01000095.1 Profundibacterium mesophilum KAUST100406-0324 Contig95, whole genome shotgun sequence 399
NZ_APKE01000096.1 Profundibacterium mesophilum KAUST100406-0324 Contig97, whole genome shotgun sequence 367
NZ_APKE01000097.1 Profundibacterium mesophilum KAUST100406-0324 Contig98, whole genome shotgun sequence 367
NZ_APKE01000098.1 Profundibacterium mesophilum KAUST100406-0324 Contig99, whole genome shotgun sequence 365
NZ_APKE01000099.1 Profundibacterium mesophilum KAUST100406-0324 Contig100, whole genome shotgun sequence 232
NZ_APKE01000100.1 Profundibacterium mesophilum KAUST100406-0324 Contig101, whole genome shotgun sequence 356
NZ_APKE01000101.1 Profundibacterium mesophilum KAUST100406-0324 Contig103, whole genome shotgun sequence 328
NZ_APKE01000102.1 Profundibacterium mesophilum KAUST100406-0324 Contig104, whole genome shotgun sequence 328
NZ_APKE01000103.1 Profundibacterium mesophilum KAUST100406-0324 Contig105, whole genome shotgun sequence 319
NZ_APKE01000104.1 Profundibacterium mesophilum KAUST100406-0324 Contig106, whole genome shotgun sequence 316
NZ_APKE01000105.1 Profundibacterium mesophilum KAUST100406-0324 Contig107, whole genome shotgun sequence 316
NZ_APKE01000106.1 Profundibacterium mesophilum KAUST100406-0324 Contig108, whole genome shotgun sequence 315
NZ_APKE01000107.1 Profundibacterium mesophilum KAUST100406-0324 Contig110, whole genome shotgun sequence 284
NZ_APKE01000108.1 Profundibacterium mesophilum KAUST100406-0324 Contig111, whole genome shotgun sequence 264
NZ_APKE01000109.1 Profundibacterium mesophilum KAUST100406-0324 Contig113, whole genome shotgun sequence 250
NZ_APKE01000110.1 Profundibacterium mesophilum KAUST100406-0324 Contig114, whole genome shotgun sequence 250
NZ_APKE01000111.1 Profundibacterium mesophilum KAUST100406-0324 Contig115, whole genome shotgun sequence 247
NZ_APKE01000112.1 Profundibacterium mesophilum KAUST100406-0324 Contig116, whole genome shotgun sequence 233
NZ_APKE01000113.1 Profundibacterium mesophilum KAUST100406-0324 Contig117, whole genome shotgun sequence 232
NZ_APKE01000114.1 Profundibacterium mesophilum KAUST100406-0324 Contig118, whole genome shotgun sequence 231
NZ_APKE01000115.1 Profundibacterium mesophilum KAUST100406-0324 Contig119, whole genome shotgun sequence 231
NZ_APKE01000116.1 Profundibacterium mesophilum KAUST100406-0324 Contig120, whole genome shotgun sequence 231
NZ_APKE01000117.1 Profundibacterium mesophilum KAUST100406-0324 Contig121, whole genome shotgun sequence 228
NZ_APKE01000118.1 Profundibacterium mesophilum KAUST100406-0324 Contig122, whole genome shotgun sequence 228
NZ_APKE01000119.1 Profundibacterium mesophilum KAUST100406-0324 Contig123, whole genome shotgun sequence 223
NZ_APKE01000120.1 Profundibacterium mesophilum KAUST100406-0324 Contig124, whole genome shotgun sequence 223
NZ_APKE01000121.1 Profundibacterium mesophilum KAUST100406-0324 Contig125, whole genome shotgun sequence 220
NZ_APKE01000122.1 Profundibacterium mesophilum KAUST100406-0324 Contig126, whole genome shotgun sequence 214
NZ_APKE01000123.1 Profundibacterium mesophilum KAUST100406-0324 Contig127, whole genome shotgun sequence 212
NZ_APKE01000124.1 Profundibacterium mesophilum KAUST100406-0324 Contig128, whole genome shotgun sequence 211
NZ_APKE01000125.1 Profundibacterium mesophilum KAUST100406-0324 Contig129, whole genome shotgun sequence 211
NZ_APKE01000126.1 Profundibacterium mesophilum KAUST100406-0324 Contig130, whole genome shotgun sequence 211
NZ_APKE01000127.1 Profundibacterium mesophilum KAUST100406-0324 Contig131, whole genome shotgun sequence 211
NZ_APKE01000128.1 Profundibacterium mesophilum KAUST100406-0324 Contig132, whole genome shotgun sequence 203
NZ_APKE01000129.1 Profundibacterium mesophilum KAUST100406-0324 Contig133, whole genome shotgun sequence 202
NZ_APKE01000130.1 Profundibacterium mesophilum KAUST100406-0324 Contig134, whole genome shotgun sequence 202

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory