fast.genomicscompare 6,575 genera of bacteria & archaea

 

Gemmobacter_B ruber CCP-1

Genome identifier: GCF_009908315.1

NCBI assembly name: ASM990831v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Gemmobacter_B, Gemmobacter_B ruber

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Rhodobacter, Rhodobacter ruber

Scaffolds: 23

Genes: 3,879 Protein-coding: 3,799 RNAs: 54 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAAATW010000001.1 Rhodobacter ruber strain CCP-1 contig00001, whole genome shotgun sequence 1,696,262
NZ_JAAATW010000002.1 Rhodobacter ruber strain CCP-1 contig00002, whole genome shotgun sequence 809,392
NZ_JAAATW010000003.1 Rhodobacter ruber strain CCP-1 contig00003, whole genome shotgun sequence 790,471
NZ_JAAATW010000004.1 Rhodobacter ruber strain CCP-1 contig00004, whole genome shotgun sequence 304,457
NZ_JAAATW010000005.1 Rhodobacter ruber strain CCP-1 contig00005, whole genome shotgun sequence 139,998
NZ_JAAATW010000006.1 Rhodobacter ruber strain CCP-1 contig00006, whole genome shotgun sequence 55,903
NZ_JAAATW010000007.1 Rhodobacter ruber strain CCP-1 contig00007, whole genome shotgun sequence 55,649
NZ_JAAATW010000008.1 Rhodobacter ruber strain CCP-1 contig00008, whole genome shotgun sequence 53,218
NZ_JAAATW010000009.1 Rhodobacter ruber strain CCP-1 contig00009, whole genome shotgun sequence 21,305
NZ_JAAATW010000010.1 Rhodobacter ruber strain CCP-1 contig00010, whole genome shotgun sequence 15,178
NZ_JAAATW010000011.1 Rhodobacter ruber strain CCP-1 contig00011, whole genome shotgun sequence 5,500
NZ_JAAATW010000012.1 Rhodobacter ruber strain CCP-1 contig00012, whole genome shotgun sequence 4,235
NZ_JAAATW010000013.1 Rhodobacter ruber strain CCP-1 contig00013, whole genome shotgun sequence 1,271
NZ_JAAATW010000014.1 Rhodobacter ruber strain CCP-1 contig00014, whole genome shotgun sequence 857
NZ_JAAATW010000015.1 Rhodobacter ruber strain CCP-1 contig00015, whole genome shotgun sequence 695
NZ_JAAATW010000016.1 Rhodobacter ruber strain CCP-1 contig00016, whole genome shotgun sequence 656
NZ_JAAATW010000017.1 Rhodobacter ruber strain CCP-1 contig00017, whole genome shotgun sequence 591
NZ_JAAATW010000018.1 Rhodobacter ruber strain CCP-1 contig00018, whole genome shotgun sequence 561
NZ_JAAATW010000019.1 Rhodobacter ruber strain CCP-1 contig00019, whole genome shotgun sequence 523
NZ_JAAATW010000020.1 Rhodobacter ruber strain CCP-1 contig00020, whole genome shotgun sequence 468
NZ_JAAATW010000021.1 Rhodobacter ruber strain CCP-1 contig00021, whole genome shotgun sequence 369
NZ_JAAATW010000022.1 Rhodobacter ruber strain CCP-1 contig00022, whole genome shotgun sequence 254
NZ_JAAATW010000023.1 Rhodobacter ruber strain CCP-1 contig00023, whole genome shotgun sequence 253

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory