fast.genomicscompare 6,575 genera of bacteria & archaea

 

Ruegeria_B sp010500245 PrR005

Genome identifier: GCF_010500245.1

NCBI assembly name: ASM1050024v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Ruegeria_B, Ruegeria_B sp010500245

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Ruegeria

Scaffolds: 57

Genes: 4,911 Protein-coding: 4,752 RNAs: 53 pseudogenes: 106

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAAGOX010000001.1 Ruegeria sp. PrR005 NODE_10_length_206793_cov_69.4391, whole genome shotgun sequence 206,793
NZ_JAAGOX010000002.1 Ruegeria sp. PrR005 NODE_11_length_200660_cov_72.0653, whole genome shotgun sequence 200,660
NZ_JAAGOX010000003.1 Ruegeria sp. PrR005 NODE_12_length_159852_cov_100.609, whole genome shotgun sequence 159,852
NZ_JAAGOX010000004.1 Ruegeria sp. PrR005 NODE_13_length_130732_cov_70.2781, whole genome shotgun sequence 130,732
NZ_JAAGOX010000005.1 Ruegeria sp. PrR005 NODE_14_length_129003_cov_69.3813, whole genome shotgun sequence 129,003
NZ_JAAGOX010000006.1 Ruegeria sp. PrR005 NODE_15_length_125372_cov_85.9355, whole genome shotgun sequence 125,372
NZ_JAAGOX010000007.1 Ruegeria sp. PrR005 NODE_16_length_114215_cov_292.777, whole genome shotgun sequence 114,215
NZ_JAAGOX010000008.1 Ruegeria sp. PrR005 NODE_17_length_97632_cov_75.2026, whole genome shotgun sequence 97,632
NZ_JAAGOX010000009.1 Ruegeria sp. PrR005 NODE_18_length_96987_cov_105.772, whole genome shotgun sequence 96,987
NZ_JAAGOX010000010.1 Ruegeria sp. PrR005 NODE_19_length_87296_cov_150.173, whole genome shotgun sequence 87,296
NZ_JAAGOX010000011.1 Ruegeria sp. PrR005 NODE_1_length_706638_cov_92.5138, whole genome shotgun sequence 706,638
NZ_JAAGOX010000012.1 Ruegeria sp. PrR005 NODE_20_length_85151_cov_78.1691, whole genome shotgun sequence 85,151
NZ_JAAGOX010000013.1 Ruegeria sp. PrR005 NODE_21_length_79466_cov_111.658, whole genome shotgun sequence 79,466
NZ_JAAGOX010000014.1 Ruegeria sp. PrR005 NODE_22_length_77890_cov_104.989, whole genome shotgun sequence 77,890
NZ_JAAGOX010000015.1 Ruegeria sp. PrR005 NODE_23_length_64151_cov_154.095, whole genome shotgun sequence 64,151
NZ_JAAGOX010000016.1 Ruegeria sp. PrR005 NODE_24_length_63834_cov_84.574, whole genome shotgun sequence 63,834
NZ_JAAGOX010000017.1 Ruegeria sp. PrR005 NODE_25_length_43756_cov_101.794, whole genome shotgun sequence 43,756
NZ_JAAGOX010000018.1 Ruegeria sp. PrR005 NODE_26_length_43090_cov_81.9065, whole genome shotgun sequence 43,090
NZ_JAAGOX010000019.1 Ruegeria sp. PrR005 NODE_27_length_39718_cov_78.8702, whole genome shotgun sequence 39,718
NZ_JAAGOX010000020.1 Ruegeria sp. PrR005 NODE_28_length_33026_cov_149.254, whole genome shotgun sequence 33,026
NZ_JAAGOX010000021.1 Ruegeria sp. PrR005 NODE_29_length_33023_cov_101.251, whole genome shotgun sequence 33,023
NZ_JAAGOX010000022.1 Ruegeria sp. PrR005 NODE_2_length_499239_cov_112.068, whole genome shotgun sequence 499,239
NZ_JAAGOX010000023.1 Ruegeria sp. PrR005 NODE_30_length_31771_cov_97.4234, whole genome shotgun sequence 31,771
NZ_JAAGOX010000024.1 Ruegeria sp. PrR005 NODE_31_length_28156_cov_88.302, whole genome shotgun sequence 28,156
NZ_JAAGOX010000025.1 Ruegeria sp. PrR005 NODE_32_length_22127_cov_79.2155, whole genome shotgun sequence 22,127
NZ_JAAGOX010000026.1 Ruegeria sp. PrR005 NODE_33_length_13758_cov_106.024, whole genome shotgun sequence 13,758
NZ_JAAGOX010000027.1 Ruegeria sp. PrR005 NODE_34_length_11385_cov_104.833, whole genome shotgun sequence 11,385
NZ_JAAGOX010000028.1 Ruegeria sp. PrR005 NODE_35_length_9325_cov_76.4882, whole genome shotgun sequence 9,325
NZ_JAAGOX010000029.1 Ruegeria sp. PrR005 NODE_36_length_9133_cov_80.6759, whole genome shotgun sequence 9,133
NZ_JAAGOX010000030.1 Ruegeria sp. PrR005 NODE_37_length_6397_cov_110.641, whole genome shotgun sequence 6,397
NZ_JAAGOX010000031.1 Ruegeria sp. PrR005 NODE_38_length_6078_cov_330.835, whole genome shotgun sequence 6,078
NZ_JAAGOX010000032.1 Ruegeria sp. PrR005 NODE_3_length_321288_cov_117.658, whole genome shotgun sequence 321,288
NZ_JAAGOX010000033.1 Ruegeria sp. PrR005 NODE_40_length_5261_cov_99.8459, whole genome shotgun sequence 5,261
NZ_JAAGOX010000034.1 Ruegeria sp. PrR005 NODE_41_length_5201_cov_146.697, whole genome shotgun sequence 5,201
NZ_JAAGOX010000035.1 Ruegeria sp. PrR005 NODE_42_length_3780_cov_142.286, whole genome shotgun sequence 3,780
NZ_JAAGOX010000036.1 Ruegeria sp. PrR005 NODE_43_length_3714_cov_136.265, whole genome shotgun sequence 3,714
NZ_JAAGOX010000037.1 Ruegeria sp. PrR005 NODE_44_length_3540_cov_165.71, whole genome shotgun sequence 3,540
NZ_JAAGOX010000038.1 Ruegeria sp. PrR005 NODE_45_length_3143_cov_86.1774, whole genome shotgun sequence 3,143
NZ_JAAGOX010000039.1 Ruegeria sp. PrR005 NODE_46_length_2506_cov_91.3656, whole genome shotgun sequence 2,506
NZ_JAAGOX010000040.1 Ruegeria sp. PrR005 NODE_47_length_2367_cov_96.2087, whole genome shotgun sequence 2,367
NZ_JAAGOX010000041.1 Ruegeria sp. PrR005 NODE_48_length_2220_cov_87.7331, whole genome shotgun sequence 2,220
NZ_JAAGOX010000042.1 Ruegeria sp. PrR005 NODE_49_length_1979_cov_98.1125, whole genome shotgun sequence 1,979
NZ_JAAGOX010000043.1 Ruegeria sp. PrR005 NODE_4_length_289561_cov_82.3727, whole genome shotgun sequence 289,561
NZ_JAAGOX010000044.1 Ruegeria sp. PrR005 NODE_50_length_1671_cov_175.897, whole genome shotgun sequence 1,671
NZ_JAAGOX010000045.1 Ruegeria sp. PrR005 NODE_51_length_1517_cov_185.369, whole genome shotgun sequence 1,517
NZ_JAAGOX010000046.1 Ruegeria sp. PrR005 NODE_52_length_1338_cov_223.47, whole genome shotgun sequence 1,338
NZ_JAAGOX010000047.1 Ruegeria sp. PrR005 NODE_53_length_1270_cov_201.565, whole genome shotgun sequence 1,270
NZ_JAAGOX010000048.1 Ruegeria sp. PrR005 NODE_54_length_1121_cov_113.596, whole genome shotgun sequence 1,121
NZ_JAAGOX010000049.1 Ruegeria sp. PrR005 NODE_55_length_1115_cov_82.1435, whole genome shotgun sequence 1,115
NZ_JAAGOX010000050.1 Ruegeria sp. PrR005 NODE_56_length_1108_cov_1425.59, whole genome shotgun sequence 1,108
NZ_JAAGOX010000051.1 Ruegeria sp. PrR005 NODE_58_length_1027_cov_44.0979, whole genome shotgun sequence 1,027
NZ_JAAGOX010000052.1 Ruegeria sp. PrR005 NODE_59_length_1010_cov_13.403, whole genome shotgun sequence 1,010
NZ_JAAGOX010000053.1 Ruegeria sp. PrR005 NODE_5_length_278592_cov_157.346, whole genome shotgun sequence 278,592
NZ_JAAGOX010000054.1 Ruegeria sp. PrR005 NODE_6_length_228919_cov_76.4482, whole genome shotgun sequence 228,919
NZ_JAAGOX010000055.1 Ruegeria sp. PrR005 NODE_7_length_228320_cov_70.9723, whole genome shotgun sequence 228,320
NZ_JAAGOX010000056.1 Ruegeria sp. PrR005 NODE_8_length_213264_cov_94.2474, whole genome shotgun sequence 213,264
NZ_JAAGOX010000057.1 Ruegeria sp. PrR005 NODE_9_length_209317_cov_89.4664, whole genome shotgun sequence 209,317

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory