fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudomaricurvus hydrocarbonicus JCM 30134

Genome identifier: GCF_011602365.1

NCBI assembly name: ASM1160236v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Cellvibrionaceae, Pseudomaricurvus, Pseudomaricurvus hydrocarbonicus

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Cellvibrionaceae, Aestuariicella, Aestuariicella hydrocarbonica

Scaffolds: 52

Genes: 4,747 Protein-coding: 4,668 RNAs: 50 pseudogenes: 29

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAAONZ010000001.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_1_length_561256_cov_40.204719, whole genome shotgun sequence 561,256
NZ_JAAONZ010000002.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_2_length_512826_cov_40.230979, whole genome shotgun sequence 512,826
NZ_JAAONZ010000003.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_3_length_500534_cov_41.660600, whole genome shotgun sequence 500,534
NZ_JAAONZ010000004.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_4_length_469011_cov_37.818783, whole genome shotgun sequence 469,011
NZ_JAAONZ010000005.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_5_length_283385_cov_30.929596, whole genome shotgun sequence 283,385
NZ_JAAONZ010000006.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_6_length_255920_cov_33.326932, whole genome shotgun sequence 255,920
NZ_JAAONZ010000007.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_7_length_221271_cov_31.648135, whole genome shotgun sequence 221,271
NZ_JAAONZ010000008.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_8_length_190002_cov_43.568941, whole genome shotgun sequence 190,002
NZ_JAAONZ010000009.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_9_length_176882_cov_41.746268, whole genome shotgun sequence 176,882
NZ_JAAONZ010000010.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_10_length_175302_cov_43.038543, whole genome shotgun sequence 175,302
NZ_JAAONZ010000011.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_11_length_167848_cov_32.071891, whole genome shotgun sequence 167,848
NZ_JAAONZ010000012.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_12_length_167788_cov_32.261184, whole genome shotgun sequence 167,788
NZ_JAAONZ010000013.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_13_length_167519_cov_41.851420, whole genome shotgun sequence 167,519
NZ_JAAONZ010000014.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_14_length_163671_cov_38.650376, whole genome shotgun sequence 163,671
NZ_JAAONZ010000015.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_15_length_161878_cov_32.770909, whole genome shotgun sequence 161,878
NZ_JAAONZ010000016.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_16_length_161698_cov_30.641830, whole genome shotgun sequence 161,698
NZ_JAAONZ010000017.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_17_length_154424_cov_42.406797, whole genome shotgun sequence 154,424
NZ_JAAONZ010000018.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_18_length_140617_cov_44.182745, whole genome shotgun sequence 140,617
NZ_JAAONZ010000019.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_19_length_114163_cov_44.054585, whole genome shotgun sequence 114,163
NZ_JAAONZ010000020.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_20_length_109733_cov_33.015938, whole genome shotgun sequence 109,733
NZ_JAAONZ010000021.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_21_length_90970_cov_44.748968, whole genome shotgun sequence 90,970
NZ_JAAONZ010000022.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_22_length_83480_cov_44.757063, whole genome shotgun sequence 83,480
NZ_JAAONZ010000023.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_23_length_82330_cov_37.957194, whole genome shotgun sequence 82,330
NZ_JAAONZ010000024.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_24_length_78982_cov_43.787068, whole genome shotgun sequence 78,982
NZ_JAAONZ010000025.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_25_length_76430_cov_41.623085, whole genome shotgun sequence 76,430
NZ_JAAONZ010000026.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_26_length_72226_cov_44.301297, whole genome shotgun sequence 72,226
NZ_JAAONZ010000027.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_27_length_69103_cov_39.233626, whole genome shotgun sequence 69,103
NZ_JAAONZ010000028.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_28_length_40597_cov_31.107768, whole genome shotgun sequence 40,597
NZ_JAAONZ010000029.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_29_length_34596_cov_45.150428, whole genome shotgun sequence 34,596
NZ_JAAONZ010000030.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_30_length_33612_cov_33.824192, whole genome shotgun sequence 33,612
NZ_JAAONZ010000031.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_31_length_29289_cov_47.713247, whole genome shotgun sequence 29,289
NZ_JAAONZ010000032.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_32_length_28235_cov_37.536672, whole genome shotgun sequence 28,235
NZ_JAAONZ010000033.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_33_length_22484_cov_43.179538, whole genome shotgun sequence 22,484
NZ_JAAONZ010000034.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_34_length_22448_cov_44.439602, whole genome shotgun sequence 22,448
NZ_JAAONZ010000035.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_35_length_18670_cov_43.611192, whole genome shotgun sequence 18,670
NZ_JAAONZ010000036.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_36_length_17617_cov_42.459362, whole genome shotgun sequence 17,617
NZ_JAAONZ010000037.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_37_length_13811_cov_33.428050, whole genome shotgun sequence 13,811
NZ_JAAONZ010000038.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_38_length_11508_cov_43.594274, whole genome shotgun sequence 11,508
NZ_JAAONZ010000039.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_39_length_9341_cov_33.488069, whole genome shotgun sequence 9,341
NZ_JAAONZ010000040.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_40_length_7418_cov_43.813896, whole genome shotgun sequence 7,418
NZ_JAAONZ010000041.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_41_length_3936_cov_42.566186, whole genome shotgun sequence 3,936
NZ_JAAONZ010000042.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_42_length_3041_cov_42.995548, whole genome shotgun sequence 3,041
NZ_JAAONZ010000043.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_43_length_2636_cov_33.393241, whole genome shotgun sequence 2,636
NZ_JAAONZ010000044.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_44_length_1782_cov_68.924142, whole genome shotgun sequence 1,782
NZ_JAAONZ010000045.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_45_length_1681_cov_63.615385, whole genome shotgun sequence 1,681
NZ_JAAONZ010000046.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_46_length_1608_cov_206.796234, whole genome shotgun sequence 1,608
NZ_JAAONZ010000047.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_47_length_1507_cov_214.399711, whole genome shotgun sequence 1,507
NZ_JAAONZ010000048.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_48_length_1329_cov_337.814570, whole genome shotgun sequence 1,329
NZ_JAAONZ010000049.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_49_length_1310_cov_253.481918, whole genome shotgun sequence 1,310
NZ_JAAONZ010000050.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_50_length_1216_cov_74.706849, whole genome shotgun sequence 1,216
NZ_JAAONZ010000051.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_51_length_1179_cov_180.587902, whole genome shotgun sequence 1,179
NZ_JAAONZ010000052.1 Aestuariicella hydrocarbonica strain JCM 30134 NODE_52_length_1174_cov_202.757835, whole genome shotgun sequence 1,174

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory