fast.genomicscompare 6,575 genera of bacteria & archaea

 

Marivivens donghaensis_A HF1

Genome identifier: GCF_011806565.1

NCBI assembly name: ASM1180656v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Marivivens, Marivivens donghaensis_A

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Marivivens, Marivivens donghaensis

Scaffolds: 24

Genes: 3,305 Protein-coding: 3,163 RNAs: 51 pseudogenes: 91

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAATOP010000001.1 Marivivens donghaensis strain HF1 NODE_1_length_583417_cov_6.234788, whole genome shotgun sequence 583,417
NZ_JAATOP010000002.1 Marivivens donghaensis strain HF1 NODE_2_length_458514_cov_6.576437, whole genome shotgun sequence 458,514
NZ_JAATOP010000003.1 Marivivens donghaensis strain HF1 NODE_3_length_312672_cov_6.273037, whole genome shotgun sequence 312,672
NZ_JAATOP010000004.1 Marivivens donghaensis strain HF1 NODE_4_length_308053_cov_5.735372, whole genome shotgun sequence 308,053
NZ_JAATOP010000005.1 Marivivens donghaensis strain HF1 NODE_5_length_292199_cov_5.332009, whole genome shotgun sequence 292,199
NZ_JAATOP010000006.1 Marivivens donghaensis strain HF1 NODE_6_length_233573_cov_5.234201, whole genome shotgun sequence 233,573
NZ_JAATOP010000007.1 Marivivens donghaensis strain HF1 NODE_7_length_200689_cov_5.464195, whole genome shotgun sequence 200,689
NZ_JAATOP010000008.1 Marivivens donghaensis strain HF1 NODE_8_length_162487_cov_6.564590, whole genome shotgun sequence 162,487
NZ_JAATOP010000009.1 Marivivens donghaensis strain HF1 NODE_9_length_120876_cov_5.045365, whole genome shotgun sequence 120,876
NZ_JAATOP010000010.1 Marivivens donghaensis strain HF1 NODE_10_length_111894_cov_5.447597, whole genome shotgun sequence 111,894
NZ_JAATOP010000011.1 Marivivens donghaensis strain HF1 NODE_11_length_108097_cov_6.667099, whole genome shotgun sequence 108,097
NZ_JAATOP010000012.1 Marivivens donghaensis strain HF1 NODE_12_length_107639_cov_6.705686, whole genome shotgun sequence 107,639
NZ_JAATOP010000013.1 Marivivens donghaensis strain HF1 NODE_13_length_85062_cov_6.752568, whole genome shotgun sequence 85,062
NZ_JAATOP010000014.1 Marivivens donghaensis strain HF1 NODE_14_length_64574_cov_6.718406, whole genome shotgun sequence 64,574
NZ_JAATOP010000015.1 Marivivens donghaensis strain HF1 NODE_15_length_54102_cov_5.713022, whole genome shotgun sequence 54,102
NZ_JAATOP010000016.1 Marivivens donghaensis strain HF1 NODE_16_length_50622_cov_6.122248, whole genome shotgun sequence 50,622
NZ_JAATOP010000017.1 Marivivens donghaensis strain HF1 NODE_17_length_47041_cov_5.302061, whole genome shotgun sequence 47,041
NZ_JAATOP010000018.1 Marivivens donghaensis strain HF1 NODE_18_length_16614_cov_5.204451, whole genome shotgun sequence 16,614
NZ_JAATOP010000019.1 Marivivens donghaensis strain HF1 NODE_19_length_7351_cov_7.736321, whole genome shotgun sequence 7,351
NZ_JAATOP010000020.1 Marivivens donghaensis strain HF1 NODE_20_length_5507_cov_29.245304, whole genome shotgun sequence 5,507
NZ_JAATOP010000021.1 Marivivens donghaensis strain HF1 NODE_22_length_2060_cov_12.990923, whole genome shotgun sequence 2,060
NZ_JAATOP010000022.1 Marivivens donghaensis strain HF1 NODE_23_length_1826_cov_13.355060, whole genome shotgun sequence 1,826
NZ_JAATOP010000023.1 Marivivens donghaensis strain HF1 NODE_24_length_1523_cov_11.746196, whole genome shotgun sequence 1,523
NZ_JAATOP010000024.1 Marivivens donghaensis strain HF1 NODE_25_length_682_cov_5.960331, whole genome shotgun sequence 682

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory