fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudoroseicyclus_A tamaricis CLL3-39

Genome identifier: GCF_012070395.1

NCBI assembly name: ASM1207039v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudoroseicyclus_A, Pseudoroseicyclus_A tamaricis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pseudoroseicyclus, Pseudoroseicyclus tamaricis

Scaffolds: 4

Genes: 3,671 Protein-coding: 3,584 RNAs: 53 pseudogenes: 34

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAAFYS010000001.1 Pseudoroseicyclus tamaricis strain CLL3-39 NODE_1_length_1407507_cov_77.416566, whole genome shotgun sequence 1,407,507
NZ_JAAFYS010000002.1 Pseudoroseicyclus tamaricis strain CLL3-39 NODE_2_length_1110781_cov_73.489865, whole genome shotgun sequence 1,110,781
NZ_JAAFYS010000003.1 Pseudoroseicyclus tamaricis strain CLL3-39 NODE_3_length_810097_cov_77.781227, whole genome shotgun sequence 810,097
NZ_JAAFYS010000004.1 Pseudoroseicyclus tamaricis strain CLL3-39 NODE_4_length_518791_cov_78.769863, whole genome shotgun sequence 518,791

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory