fast.genomicscompare 6,575 genera of bacteria & archaea

 

Croceivirga_A thetidis DJ-13

Genome identifier: GCF_012272815.1

NCBI assembly name: ASM1227281v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Croceivirga_A, Croceivirga_A thetidis

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Croceivirga, Croceivirga thetidis

Scaffolds: 6

Genes: 3,304 Protein-coding: 3,218 RNAs: 43 pseudogenes: 43

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAAWWL010000001.1 Croceivirga thetidis strain DJ-13 contig1, whole genome shotgun sequence 1,758,348
NZ_JAAWWL010000002.1 Croceivirga thetidis strain DJ-13 contig2, whole genome shotgun sequence 1,690,459
NZ_JAAWWL010000003.1 Croceivirga thetidis strain DJ-13 contig3, whole genome shotgun sequence 231,081
NZ_JAAWWL010000004.1 Croceivirga thetidis strain DJ-13 contig4, whole genome shotgun sequence 17,833
NZ_JAAWWL010000005.1 Croceivirga thetidis strain DJ-13 contig5, whole genome shotgun sequence 5,327
NZ_JAAWWL010000006.1 Croceivirga thetidis strain DJ-13 contig6, whole genome shotgun sequence 5,188

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory