fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pacificispira spongiicola KN72

Genome identifier: GCF_012926505.1

NCBI assembly name: ASM1292650v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, UBA8366, GCA-2696645, Pacificispira, Pacificispira spongiicola

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Rhodospirillaceae, Pacificispira, Pacificispira spongiicola

Scaffolds: 19

Genes: 3,985 Protein-coding: 3,917 RNAs: 52 pseudogenes: 16

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JABBNT010000001.1 Pacificispira spongiicola strain KN72 Scaffold1, whole genome shotgun sequence 1,131,967
NZ_JABBNT010000002.1 Pacificispira spongiicola strain KN72 Scaffold2, whole genome shotgun sequence 901,950
NZ_JABBNT010000003.1 Pacificispira spongiicola strain KN72 Scaffold3, whole genome shotgun sequence 755,649
NZ_JABBNT010000004.1 Pacificispira spongiicola strain KN72 Scaffold4, whole genome shotgun sequence 564,181
NZ_JABBNT010000005.1 Pacificispira spongiicola strain KN72 Scaffold5, whole genome shotgun sequence 524,294
NZ_JABBNT010000006.1 Pacificispira spongiicola strain KN72 Scaffold6, whole genome shotgun sequence 121,696
NZ_JABBNT010000007.1 Pacificispira spongiicola strain KN72 Scaffold7, whole genome shotgun sequence 68,492
NZ_JABBNT010000008.1 Pacificispira spongiicola strain KN72 Scaffold8, whole genome shotgun sequence 66,690
NZ_JABBNT010000009.1 Pacificispira spongiicola strain KN72 Scaffold9, whole genome shotgun sequence 32,038
NZ_JABBNT010000010.1 Pacificispira spongiicola strain KN72 Scaffold10, whole genome shotgun sequence 20,273
NZ_JABBNT010000011.1 Pacificispira spongiicola strain KN72 Scaffold11, whole genome shotgun sequence 5,809
NZ_JABBNT010000012.1 Pacificispira spongiicola strain KN72 Scaffold12, whole genome shotgun sequence 4,510
NZ_JABBNT010000013.1 Pacificispira spongiicola strain KN72 Scaffold13, whole genome shotgun sequence 2,526
NZ_JABBNT010000014.1 Pacificispira spongiicola strain KN72 Scaffold14, whole genome shotgun sequence 1,877
NZ_JABBNT010000015.1 Pacificispira spongiicola strain KN72 Scaffold15, whole genome shotgun sequence 1,451
NZ_JABBNT010000016.1 Pacificispira spongiicola strain KN72 Scaffold16, whole genome shotgun sequence 1,352
NZ_JABBNT010000017.1 Pacificispira spongiicola strain KN72 Scaffold17, whole genome shotgun sequence 796
NZ_JABBNT010000018.1 Pacificispira spongiicola strain KN72 Scaffold18, whole genome shotgun sequence 784
NZ_JABBNT010000019.1 Pacificispira spongiicola strain KN72 Scaffold19, whole genome shotgun sequence 608

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory