fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingomonas_B sp013044515 ID1715

Genome identifier: GCF_013044515.1

NCBI assembly name: ASM1304451v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas_B, Sphingomonas_B sp013044515

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas

Scaffolds: 30

Genes: 3,688 Protein-coding: 3,452 RNAs: 61 pseudogenes: 175

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JABEPR010000001.1 Sphingomonas sp. ID1715 contig1, whole genome shotgun sequence 1,022,060
NZ_JABEPR010000002.1 Sphingomonas sp. ID1715 contig2, whole genome shotgun sequence 808,985
NZ_JABEPR010000003.1 Sphingomonas sp. ID1715 contig3, whole genome shotgun sequence 488,377
NZ_JABEPR010000004.1 Sphingomonas sp. ID1715 contig4, whole genome shotgun sequence 258,624
NZ_JABEPR010000005.1 Sphingomonas sp. ID1715 contig5, whole genome shotgun sequence 203,906
NZ_JABEPR010000006.1 Sphingomonas sp. ID1715 contig6, whole genome shotgun sequence 197,848
NZ_JABEPR010000007.1 Sphingomonas sp. ID1715 contig7, whole genome shotgun sequence 192,123
NZ_JABEPR010000008.1 Sphingomonas sp. ID1715 contig8, whole genome shotgun sequence 109,239
NZ_JABEPR010000009.1 Sphingomonas sp. ID1715 contig9, whole genome shotgun sequence 57,319
NZ_JABEPR010000010.1 Sphingomonas sp. ID1715 contig10, whole genome shotgun sequence 42,664
NZ_JABEPR010000011.1 Sphingomonas sp. ID1715 contig11, whole genome shotgun sequence 41,920
NZ_JABEPR010000012.1 Sphingomonas sp. ID1715 contig12, whole genome shotgun sequence 35,579
NZ_JABEPR010000013.1 Sphingomonas sp. ID1715 contig13, whole genome shotgun sequence 34,506
NZ_JABEPR010000014.1 Sphingomonas sp. ID1715 contig14, whole genome shotgun sequence 31,428
NZ_JABEPR010000015.1 Sphingomonas sp. ID1715 contig15, whole genome shotgun sequence 31,135
NZ_JABEPR010000016.1 Sphingomonas sp. ID1715 contig16, whole genome shotgun sequence 26,226
NZ_JABEPR010000017.1 Sphingomonas sp. ID1715 contig17, whole genome shotgun sequence 15,803
NZ_JABEPR010000018.1 Sphingomonas sp. ID1715 contig18, whole genome shotgun sequence 7,826
NZ_JABEPR010000019.1 Sphingomonas sp. ID1715 contig19, whole genome shotgun sequence 5,407
NZ_JABEPR010000020.1 Sphingomonas sp. ID1715 contig20, whole genome shotgun sequence 4,853
NZ_JABEPR010000021.1 Sphingomonas sp. ID1715 contig21, whole genome shotgun sequence 4,421
NZ_JABEPR010000022.1 Sphingomonas sp. ID1715 contig22, whole genome shotgun sequence 4,387
NZ_JABEPR010000023.1 Sphingomonas sp. ID1715 contig23, whole genome shotgun sequence 4,229
NZ_JABEPR010000024.1 Sphingomonas sp. ID1715 contig24, whole genome shotgun sequence 4,109
NZ_JABEPR010000025.1 Sphingomonas sp. ID1715 contig25, whole genome shotgun sequence 3,151
NZ_JABEPR010000026.1 Sphingomonas sp. ID1715 contig26, whole genome shotgun sequence 2,443
NZ_JABEPR010000027.1 Sphingomonas sp. ID1715 contig27, whole genome shotgun sequence 1,408
NZ_JABEPR010000028.1 Sphingomonas sp. ID1715 contig28, whole genome shotgun sequence 1,352
NZ_JABEPR010000029.1 Sphingomonas sp. ID1715 contig29, whole genome shotgun sequence 1,281
NZ_JABEPR010000030.1 Sphingomonas sp. ID1715 contig30, whole genome shotgun sequence 1,201

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory