fast.genomicscompare 6,575 genera of bacteria & archaea

 

Psychromarinibacter sp013184805 HB172150

Genome identifier: GCF_013184805.1

NCBI assembly name: ASM1318480v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Psychromarinibacter, Psychromarinibacter sp013184805

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Pseudoruegeria

Scaffolds: 21

Genes: 4,934 Protein-coding: 4,795 RNAs: 49 pseudogenes: 90

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAATNG010000001.1 Pseudoruegeria sp. HB172150 scaffold1, whole genome shotgun sequence 2,444,905
NZ_JAATNG010000002.1 Pseudoruegeria sp. HB172150 scaffold2, whole genome shotgun sequence 603,873
NZ_JAATNG010000003.1 Pseudoruegeria sp. HB172150 scaffold3, whole genome shotgun sequence 426,118
NZ_JAATNG010000004.1 Pseudoruegeria sp. HB172150 scaffold4, whole genome shotgun sequence 373,477
NZ_JAATNG010000005.1 Pseudoruegeria sp. HB172150 scaffold5, whole genome shotgun sequence 359,905
NZ_JAATNG010000006.1 Pseudoruegeria sp. HB172150 scaffold6, whole genome shotgun sequence 290,498
NZ_JAATNG010000007.1 Pseudoruegeria sp. HB172150 scaffold7, whole genome shotgun sequence 286,711
NZ_JAATNG010000008.1 Pseudoruegeria sp. HB172150 scaffold8, whole genome shotgun sequence 166,426
NZ_JAATNG010000009.1 Pseudoruegeria sp. HB172150 scaffold9, whole genome shotgun sequence 39,475
NZ_JAATNG010000010.1 Pseudoruegeria sp. HB172150 scaffold10, whole genome shotgun sequence 31,613
NZ_JAATNG010000011.1 Pseudoruegeria sp. HB172150 scaffold11, whole genome shotgun sequence 9,390
NZ_JAATNG010000012.1 Pseudoruegeria sp. HB172150 scaffold12, whole genome shotgun sequence 6,917
NZ_JAATNG010000013.1 Pseudoruegeria sp. HB172150 scaffold13, whole genome shotgun sequence 3,939
NZ_JAATNG010000014.1 Pseudoruegeria sp. HB172150 scaffold14, whole genome shotgun sequence 3,784
NZ_JAATNG010000015.1 Pseudoruegeria sp. HB172150 scaffold15, whole genome shotgun sequence 3,320
NZ_JAATNG010000016.1 Pseudoruegeria sp. HB172150 scaffold16, whole genome shotgun sequence 1,176
NZ_JAATNG010000017.1 Pseudoruegeria sp. HB172150 scaffold17, whole genome shotgun sequence 1,110
NZ_JAATNG010000018.1 Pseudoruegeria sp. HB172150 scaffold18, whole genome shotgun sequence 980
NZ_JAATNG010000019.1 Pseudoruegeria sp. HB172150 scaffold19, whole genome shotgun sequence 954
NZ_JAATNG010000020.1 Pseudoruegeria sp. HB172150 scaffold20, whole genome shotgun sequence 760
NZ_JAATNG010000021.1 Pseudoruegeria sp. HB172150 scaffold21, whole genome shotgun sequence 505

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory