fast.genomicscompare 6,575 genera of bacteria & archaea

 

Actirhodobacter atriluteus HHU K3-1

Genome identifier: GCF_013370205.1

NCBI assembly name: ASM1337020v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Actirhodobacter, Actirhodobacter atriluteus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Erythrobacteraceae, Actirhodobacter, Actirhodobacter atriluteus

Scaffolds: 23

Genes: 2,853 Protein-coding: 2,776 RNAs: 53 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JABWGV010000001.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_1_length_1007690_cov_319.289713, whole genome shotgun sequence 1,007,690
NZ_JABWGV010000002.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_2_length_676748_cov_341.967670, whole genome shotgun sequence 676,748
NZ_JABWGV010000003.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_3_length_634490_cov_326.581735, whole genome shotgun sequence 634,490
NZ_JABWGV010000004.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_4_length_170102_cov_342.885993, whole genome shotgun sequence 170,102
NZ_JABWGV010000005.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_5_length_117031_cov_304.998495, whole genome shotgun sequence 117,031
NZ_JABWGV010000006.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_6_length_105384_cov_325.485694, whole genome shotgun sequence 105,384
NZ_JABWGV010000007.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_7_length_104858_cov_194.602323, whole genome shotgun sequence 104,858
NZ_JABWGV010000008.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_8_length_65498_cov_307.716299, whole genome shotgun sequence 65,498
NZ_JABWGV010000009.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_9_length_24912_cov_621.535051, whole genome shotgun sequence 24,912
NZ_JABWGV010000010.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_10_length_17805_cov_248.090035, whole genome shotgun sequence 17,805
NZ_JABWGV010000011.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_11_length_2518_cov_197.931995, whole genome shotgun sequence 2,518
NZ_JABWGV010000012.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_12_length_1786_cov_548.461673, whole genome shotgun sequence 1,786
NZ_JABWGV010000013.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_13_length_1748_cov_511.484740, whole genome shotgun sequence 1,748
NZ_JABWGV010000014.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_15_length_1487_cov_723.170922, whole genome shotgun sequence 1,487
NZ_JABWGV010000015.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_16_length_1437_cov_242.936592, whole genome shotgun sequence 1,437
NZ_JABWGV010000016.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_17_length_1225_cov_7.383275, whole genome shotgun sequence 1,225
NZ_JABWGV010000017.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_22_length_902_cov_6.944242, whole genome shotgun sequence 902
NZ_JABWGV010000018.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_23_length_806_cov_271.015089, whole genome shotgun sequence 806
NZ_JABWGV010000019.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_27_length_776_cov_15.901288, whole genome shotgun sequence 776
NZ_JABWGV010000020.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_32_length_676_cov_264.015025, whole genome shotgun sequence 676
NZ_JABWGV010000021.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_41_length_599_cov_1011.846743, whole genome shotgun sequence 599
NZ_JABWGV010000022.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_47_length_577_cov_286.692000, whole genome shotgun sequence 577
NZ_JABWGV010000023.1 Actirhodobacter atriluteus strain HHU K3-1 NODE_52_length_556_cov_469.371608, whole genome shotgun sequence 556

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory