fast.genomicscompare 6,575 genera of bacteria & archaea

 

Psychroserpens algicola Dm15

Genome identifier: GCF_014526325.1

NCBI assembly name: ASM1452632v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Psychroserpens, Psychroserpens algicola

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Flavihalobacter, Flavihalobacter algicola

Scaffolds: 17

Genes: 3,397 Protein-coding: 3,345 RNAs: 46 pseudogenes: 6

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JACNMJ010000001.1 Psychroserpens algicola strain Dm15 Scaffold1_1, whole genome shotgun sequence 1,403,000
NZ_JACNMJ010000002.1 Psychroserpens algicola strain Dm15 Scaffold2_1, whole genome shotgun sequence 593,562
NZ_JACNMJ010000003.1 Psychroserpens algicola strain Dm15 Scaffold3_1, whole genome shotgun sequence 259,318
NZ_JACNMJ010000004.1 Psychroserpens algicola strain Dm15 Scaffold3_2, whole genome shotgun sequence 257,935
NZ_JACNMJ010000005.1 Psychroserpens algicola strain Dm15 Scaffold4_1, whole genome shotgun sequence 334,647
NZ_JACNMJ010000006.1 Psychroserpens algicola strain Dm15 Scaffold5_1, whole genome shotgun sequence 258,414
NZ_JACNMJ010000007.1 Psychroserpens algicola strain Dm15 Scaffold6_1, whole genome shotgun sequence 215,530
NZ_JACNMJ010000008.1 Psychroserpens algicola strain Dm15 Scaffold7_1, whole genome shotgun sequence 191,050
NZ_JACNMJ010000009.1 Psychroserpens algicola strain Dm15 Scaffold8_1, whole genome shotgun sequence 190,698
NZ_JACNMJ010000010.1 Psychroserpens algicola strain Dm15 Scaffold9_1, whole genome shotgun sequence 58,935
NZ_JACNMJ010000011.1 Psychroserpens algicola strain Dm15 Scaffold10_1, whole genome shotgun sequence 18,784
NZ_JACNMJ010000012.1 Psychroserpens algicola strain Dm15 Scaffold11_1, whole genome shotgun sequence 5,315
NZ_JACNMJ010000013.1 Psychroserpens algicola strain Dm15 Scaffold12_1, whole genome shotgun sequence 4,411
NZ_JACNMJ010000014.1 Psychroserpens algicola strain Dm15 Scaffold13_1, whole genome shotgun sequence 3,366
NZ_JACNMJ010000015.1 Psychroserpens algicola strain Dm15 Scaffold14_1, whole genome shotgun sequence 2,127
NZ_JACNMJ010000016.1 Psychroserpens algicola strain Dm15 Scaffold15_1, whole genome shotgun sequence 680
NZ_JACNMJ010000017.1 Psychroserpens algicola strain Dm15 Scaffold16_1, whole genome shotgun sequence 659

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory