fast.genomicscompare 6,575 genera of bacteria & archaea

 

Planktosalinus lacus CGMCC 1.12924

Genome identifier: GCF_014640155.1

NCBI assembly name: ASM1464015v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Planktosalinus, Planktosalinus lacus

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Planktosalinus, Planktosalinus lacus

Scaffolds: 40

Genes: 2,758 Protein-coding: 2,702 RNAs: 44 pseudogenes: 12

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_BMGK01000001.1 Planktosalinus lacus strain CGMCC 1.12924 sequence01, whole genome shotgun sequence 477,821
NZ_BMGK01000002.1 Planktosalinus lacus strain CGMCC 1.12924 sequence02, whole genome shotgun sequence 330,448
NZ_BMGK01000003.1 Planktosalinus lacus strain CGMCC 1.12924 sequence03, whole genome shotgun sequence 324,200
NZ_BMGK01000004.1 Planktosalinus lacus strain CGMCC 1.12924 sequence04, whole genome shotgun sequence 303,016
NZ_BMGK01000005.1 Planktosalinus lacus strain CGMCC 1.12924 sequence05, whole genome shotgun sequence 281,998
NZ_BMGK01000006.1 Planktosalinus lacus strain CGMCC 1.12924 sequence06, whole genome shotgun sequence 232,017
NZ_BMGK01000007.1 Planktosalinus lacus strain CGMCC 1.12924 sequence07, whole genome shotgun sequence 229,028
NZ_BMGK01000008.1 Planktosalinus lacus strain CGMCC 1.12924 sequence08, whole genome shotgun sequence 154,667
NZ_BMGK01000009.1 Planktosalinus lacus strain CGMCC 1.12924 sequence09, whole genome shotgun sequence 145,778
NZ_BMGK01000010.1 Planktosalinus lacus strain CGMCC 1.12924 sequence10, whole genome shotgun sequence 92,078
NZ_BMGK01000011.1 Planktosalinus lacus strain CGMCC 1.12924 sequence11, whole genome shotgun sequence 89,301
NZ_BMGK01000012.1 Planktosalinus lacus strain CGMCC 1.12924 sequence12, whole genome shotgun sequence 86,802
NZ_BMGK01000013.1 Planktosalinus lacus strain CGMCC 1.12924 sequence13, whole genome shotgun sequence 85,646
NZ_BMGK01000014.1 Planktosalinus lacus strain CGMCC 1.12924 sequence14, whole genome shotgun sequence 44,409
NZ_BMGK01000015.1 Planktosalinus lacus strain CGMCC 1.12924 sequence15, whole genome shotgun sequence 29,798
NZ_BMGK01000016.1 Planktosalinus lacus strain CGMCC 1.12924 sequence16, whole genome shotgun sequence 9,519
NZ_BMGK01000017.1 Planktosalinus lacus strain CGMCC 1.12924 sequence17, whole genome shotgun sequence 6,601
NZ_BMGK01000018.1 Planktosalinus lacus strain CGMCC 1.12924 sequence18, whole genome shotgun sequence 5,439
NZ_BMGK01000019.1 Planktosalinus lacus strain CGMCC 1.12924 sequence19, whole genome shotgun sequence 4,967
NZ_BMGK01000020.1 Planktosalinus lacus strain CGMCC 1.12924 sequence20, whole genome shotgun sequence 3,197
NZ_BMGK01000021.1 Planktosalinus lacus strain CGMCC 1.12924 sequence21, whole genome shotgun sequence 2,924
NZ_BMGK01000022.1 Planktosalinus lacus strain CGMCC 1.12924 sequence22, whole genome shotgun sequence 2,883
NZ_BMGK01000023.1 Planktosalinus lacus strain CGMCC 1.12924 sequence23, whole genome shotgun sequence 2,877
NZ_BMGK01000024.1 Planktosalinus lacus strain CGMCC 1.12924 sequence24, whole genome shotgun sequence 2,465
NZ_BMGK01000025.1 Planktosalinus lacus strain CGMCC 1.12924 sequence25, whole genome shotgun sequence 2,030
NZ_BMGK01000026.1 Planktosalinus lacus strain CGMCC 1.12924 sequence26, whole genome shotgun sequence 1,826
NZ_BMGK01000027.1 Planktosalinus lacus strain CGMCC 1.12924 sequence27, whole genome shotgun sequence 1,749
NZ_BMGK01000028.1 Planktosalinus lacus strain CGMCC 1.12924 sequence28, whole genome shotgun sequence 1,607
NZ_BMGK01000029.1 Planktosalinus lacus strain CGMCC 1.12924 sequence29, whole genome shotgun sequence 1,528
NZ_BMGK01000030.1 Planktosalinus lacus strain CGMCC 1.12924 sequence30, whole genome shotgun sequence 1,430
NZ_BMGK01000031.1 Planktosalinus lacus strain CGMCC 1.12924 sequence31, whole genome shotgun sequence 1,321
NZ_BMGK01000032.1 Planktosalinus lacus strain CGMCC 1.12924 sequence32, whole genome shotgun sequence 1,219
NZ_BMGK01000033.1 Planktosalinus lacus strain CGMCC 1.12924 sequence33, whole genome shotgun sequence 928
NZ_BMGK01000034.1 Planktosalinus lacus strain CGMCC 1.12924 sequence34, whole genome shotgun sequence 907
NZ_BMGK01000035.1 Planktosalinus lacus strain CGMCC 1.12924 sequence35, whole genome shotgun sequence 890
NZ_BMGK01000036.1 Planktosalinus lacus strain CGMCC 1.12924 sequence36, whole genome shotgun sequence 753
NZ_BMGK01000037.1 Planktosalinus lacus strain CGMCC 1.12924 sequence37, whole genome shotgun sequence 746
NZ_BMGK01000038.1 Planktosalinus lacus strain CGMCC 1.12924 sequence38, whole genome shotgun sequence 710
NZ_BMGK01000039.1 Planktosalinus lacus strain CGMCC 1.12924 sequence39, whole genome shotgun sequence 639
NZ_BMGK01000040.1 Planktosalinus lacus strain CGMCC 1.12924 sequence40, whole genome shotgun sequence 541

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory