fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingomonas_R prati CGMCC 1.15645

Genome identifier: GCF_014643515.1

NCBI assembly name: ASM1464351v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas_R, Sphingomonas_R prati

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas, Sphingomonas prati

Scaffolds: 24

Genes: 3,479 Protein-coding: 3,398 RNAs: 52 pseudogenes: 29

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_BMJP01000001.1 Sphingomonas prati strain CGMCC 1.15645 sequence01, whole genome shotgun sequence 1,715,109
NZ_BMJP01000002.1 Sphingomonas prati strain CGMCC 1.15645 sequence02, whole genome shotgun sequence 559,893
NZ_BMJP01000003.1 Sphingomonas prati strain CGMCC 1.15645 sequence03, whole genome shotgun sequence 383,733
NZ_BMJP01000004.1 Sphingomonas prati strain CGMCC 1.15645 sequence04, whole genome shotgun sequence 382,692
NZ_BMJP01000005.1 Sphingomonas prati strain CGMCC 1.15645 sequence05, whole genome shotgun sequence 345,792
NZ_BMJP01000006.1 Sphingomonas prati strain CGMCC 1.15645 sequence06, whole genome shotgun sequence 127,242
NZ_BMJP01000007.1 Sphingomonas prati strain CGMCC 1.15645 sequence07, whole genome shotgun sequence 91,764
NZ_BMJP01000008.1 Sphingomonas prati strain CGMCC 1.15645 sequence08, whole genome shotgun sequence 42,780
NZ_BMJP01000009.1 Sphingomonas prati strain CGMCC 1.15645 sequence09, whole genome shotgun sequence 34,266
NZ_BMJP01000010.1 Sphingomonas prati strain CGMCC 1.15645 sequence10, whole genome shotgun sequence 22,952
NZ_BMJP01000011.1 Sphingomonas prati strain CGMCC 1.15645 sequence11, whole genome shotgun sequence 17,005
NZ_BMJP01000012.1 Sphingomonas prati strain CGMCC 1.15645 sequence12, whole genome shotgun sequence 16,060
NZ_BMJP01000013.1 Sphingomonas prati strain CGMCC 1.15645 sequence13, whole genome shotgun sequence 11,506
NZ_BMJP01000014.1 Sphingomonas prati strain CGMCC 1.15645 sequence14, whole genome shotgun sequence 10,729
NZ_BMJP01000015.1 Sphingomonas prati strain CGMCC 1.15645 sequence15, whole genome shotgun sequence 10,240
NZ_BMJP01000016.1 Sphingomonas prati strain CGMCC 1.15645 sequence16, whole genome shotgun sequence 7,917
NZ_BMJP01000017.1 Sphingomonas prati strain CGMCC 1.15645 sequence17, whole genome shotgun sequence 7,623
NZ_BMJP01000018.1 Sphingomonas prati strain CGMCC 1.15645 sequence18, whole genome shotgun sequence 5,735
NZ_BMJP01000019.1 Sphingomonas prati strain CGMCC 1.15645 sequence19, whole genome shotgun sequence 4,805
NZ_BMJP01000020.1 Sphingomonas prati strain CGMCC 1.15645 sequence20, whole genome shotgun sequence 2,297
NZ_BMJP01000021.1 Sphingomonas prati strain CGMCC 1.15645 sequence21, whole genome shotgun sequence 1,330
NZ_BMJP01000022.1 Sphingomonas prati strain CGMCC 1.15645 sequence22, whole genome shotgun sequence 1,095
NZ_BMJP01000023.1 Sphingomonas prati strain CGMCC 1.15645 sequence23, whole genome shotgun sequence 663
NZ_BMJP01000024.1 Sphingomonas prati strain CGMCC 1.15645 sequence24, whole genome shotgun sequence 567

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory