fast.genomicscompare 6,575 genera of bacteria & archaea

 

Tateyamaria omphalii KCTC 12333

Genome identifier: GCF_014651375.1

NCBI assembly name: ASM1465137v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Tateyamaria, Tateyamaria omphalii

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Tateyamaria, Tateyamaria omphalii

Scaffolds: 22

Genes: 4,703 Protein-coding: 4,635 RNAs: 48 pseudogenes: 20

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_BMWT01000001.1 Tateyamaria omphalii strain KCTC 12333 sequence01, whole genome shotgun sequence 1,137,679
NZ_BMWT01000002.1 Tateyamaria omphalii strain KCTC 12333 sequence02, whole genome shotgun sequence 1,006,766
NZ_BMWT01000003.1 Tateyamaria omphalii strain KCTC 12333 sequence03, whole genome shotgun sequence 668,520
NZ_BMWT01000004.1 Tateyamaria omphalii strain KCTC 12333 sequence04, whole genome shotgun sequence 501,244
NZ_BMWT01000005.1 Tateyamaria omphalii strain KCTC 12333 sequence05, whole genome shotgun sequence 391,141
NZ_BMWT01000006.1 Tateyamaria omphalii strain KCTC 12333 sequence06, whole genome shotgun sequence 266,014
NZ_BMWT01000007.1 Tateyamaria omphalii strain KCTC 12333 sequence07, whole genome shotgun sequence 196,373
NZ_BMWT01000008.1 Tateyamaria omphalii strain KCTC 12333 sequence08, whole genome shotgun sequence 138,370
NZ_BMWT01000009.1 Tateyamaria omphalii strain KCTC 12333 sequence09, whole genome shotgun sequence 116,703
NZ_BMWT01000010.1 Tateyamaria omphalii strain KCTC 12333 sequence10, whole genome shotgun sequence 77,641
NZ_BMWT01000011.1 Tateyamaria omphalii strain KCTC 12333 sequence11, whole genome shotgun sequence 71,314
NZ_BMWT01000012.1 Tateyamaria omphalii strain KCTC 12333 sequence12, whole genome shotgun sequence 68,638
NZ_BMWT01000013.1 Tateyamaria omphalii strain KCTC 12333 sequence13, whole genome shotgun sequence 41,550
NZ_BMWT01000014.1 Tateyamaria omphalii strain KCTC 12333 sequence14, whole genome shotgun sequence 39,485
NZ_BMWT01000015.1 Tateyamaria omphalii strain KCTC 12333 sequence15, whole genome shotgun sequence 16,528
NZ_BMWT01000016.1 Tateyamaria omphalii strain KCTC 12333 sequence16, whole genome shotgun sequence 2,555
NZ_BMWT01000017.1 Tateyamaria omphalii strain KCTC 12333 sequence17, whole genome shotgun sequence 2,040
NZ_BMWT01000018.1 Tateyamaria omphalii strain KCTC 12333 sequence18, whole genome shotgun sequence 1,507
NZ_BMWT01000019.1 Tateyamaria omphalii strain KCTC 12333 sequence19, whole genome shotgun sequence 1,253
NZ_BMWT01000020.1 Tateyamaria omphalii strain KCTC 12333 sequence20, whole genome shotgun sequence 926
NZ_BMWT01000021.1 Tateyamaria omphalii strain KCTC 12333 sequence21, whole genome shotgun sequence 703
NZ_BMWT01000022.1 Tateyamaria omphalii strain KCTC 12333 sequence22, whole genome shotgun sequence 501

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory