fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADKYY01 sp015354315 GCR5

Genome identifier: GCF_015354315.1

NCBI assembly name: ASM1535431v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Weeksellaceae, JADKYY01, JADKYY01 sp015354315

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Weeksellaceae, Chryseobacterium

Scaffolds: 20

Genes: 1,993 Protein-coding: 1,936 RNAs: 47 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JADKYY010000001.1 Planobacterium oryzisoli strain GCR5 contig1, whole genome shotgun sequence 336,850
NZ_JADKYY010000002.1 Planobacterium oryzisoli strain GCR5 contig2, whole genome shotgun sequence 263,257
NZ_JADKYY010000003.1 Planobacterium oryzisoli strain GCR5 contig3, whole genome shotgun sequence 223,859
NZ_JADKYY010000004.1 Planobacterium oryzisoli strain GCR5 contig4, whole genome shotgun sequence 201,441
NZ_JADKYY010000005.1 Planobacterium oryzisoli strain GCR5 contig5, whole genome shotgun sequence 179,643
NZ_JADKYY010000006.1 Planobacterium oryzisoli strain GCR5 contig6, whole genome shotgun sequence 163,070
NZ_JADKYY010000007.1 Planobacterium oryzisoli strain GCR5 contig7, whole genome shotgun sequence 147,451
NZ_JADKYY010000008.1 Planobacterium oryzisoli strain GCR5 contig8, whole genome shotgun sequence 99,433
NZ_JADKYY010000009.1 Planobacterium oryzisoli strain GCR5 contig9, whole genome shotgun sequence 93,251
NZ_JADKYY010000010.1 Planobacterium oryzisoli strain GCR5 contig10, whole genome shotgun sequence 85,843
NZ_JADKYY010000011.1 Planobacterium oryzisoli strain GCR5 contig11, whole genome shotgun sequence 81,118
NZ_JADKYY010000012.1 Planobacterium oryzisoli strain GCR5 contig12, whole genome shotgun sequence 73,345
NZ_JADKYY010000013.1 Planobacterium oryzisoli strain GCR5 contig13, whole genome shotgun sequence 71,948
NZ_JADKYY010000014.1 Planobacterium oryzisoli strain GCR5 contig14, whole genome shotgun sequence 64,937
NZ_JADKYY010000015.1 Planobacterium oryzisoli strain GCR5 contig15, whole genome shotgun sequence 9,146
NZ_JADKYY010000016.1 Planobacterium oryzisoli strain GCR5 contig16, whole genome shotgun sequence 5,217
NZ_JADKYY010000017.1 Planobacterium oryzisoli strain GCR5 contig17, whole genome shotgun sequence 1,953
NZ_JADKYY010000018.1 Planobacterium oryzisoli strain GCR5 contig18, whole genome shotgun sequence 1,691
NZ_JADKYY010000019.1 Planobacterium oryzisoli strain GCR5 contig19, whole genome shotgun sequence 1,391
NZ_JADKYY010000020.1 Planobacterium oryzisoli strain GCR5 contig20, whole genome shotgun sequence 1,356

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory