fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAHEBU01 sp016125575 RI_271

Genome identifier: GCF_016125575.1

NCBI assembly name: ASM1612557v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, JAHEBU01, JAHEBU01 sp016125575

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Limimaricola

Scaffolds: 7

Genes: 3,540 Protein-coding: 3,465 RNAs: 52 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_WGLM01000001.1 MAG: Limimaricola sp. isolate RI_271 c_000000011500, whole genome shotgun sequence 284,652
NZ_WGLM01000002.1 MAG: Limimaricola sp. isolate RI_271 c_000000130438, whole genome shotgun sequence 919,139
NZ_WGLM01000003.1 MAG: Limimaricola sp. isolate RI_271 c_000000154203, whole genome shotgun sequence 202,040
NZ_WGLM01000004.1 MAG: Limimaricola sp. isolate RI_271 c_000000127134, whole genome shotgun sequence 961,474
NZ_WGLM01000005.1 MAG: Limimaricola sp. isolate RI_271 c_000000120440, whole genome shotgun sequence 844,720
NZ_WGLM01000006.1 MAG: Limimaricola sp. isolate RI_271 c_000000006896, whole genome shotgun sequence 294,139
NZ_WGLM01000007.1 MAG: Limimaricola sp. isolate RI_271 c_000000173544, whole genome shotgun sequence 129,659

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory