fast.genomicscompare 6,575 genera of bacteria & archaea

 

Oceanicola pacificus_A SM1903

Genome identifier: GCF_016134045.1

NCBI assembly name: ASM1613404v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Oceanicola, Oceanicola pacificus_A

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pelagovum, Pelagovum pacificum

Scaffolds: 3

Genes: 4,027 Protein-coding: 3,960 RNAs: 56 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP065915.1 Pelagovum pacificum strain SM1903 chromosome, complete genome 4,040,866
NZ_CP065916.1 Pelagovum pacificum strain SM1903 plasmid p_SM1903_1, complete sequence 41,363
NZ_CP065917.1 Pelagovum pacificum strain SM1903 plasmid p_SM1903_2, complete sequence 9,705

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory