fast.genomicscompare 6,575 genera of bacteria & archaea

 

Spongiibacter marinus DSM 17750

Genome identifier: GCF_016906995.1

NCBI assembly name: ASM1690699v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Spongiibacteraceae, Spongiibacter, Spongiibacter marinus

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Spongiibacteraceae, Spongiibacter, Spongiibacter marinus

Scaffolds: 29

Genes: 3,399 Protein-coding: 3,330 RNAs: 47 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAFBBD010000001.1 Spongiibacter marinus strain DSM 17750 Ga0415252_01, whole genome shotgun sequence 531,766
NZ_JAFBBD010000002.1 Spongiibacter marinus strain DSM 17750 Ga0415252_02, whole genome shotgun sequence 438,269
NZ_JAFBBD010000003.1 Spongiibacter marinus strain DSM 17750 Ga0415252_03, whole genome shotgun sequence 434,688
NZ_JAFBBD010000004.1 Spongiibacter marinus strain DSM 17750 Ga0415252_04, whole genome shotgun sequence 392,873
NZ_JAFBBD010000005.1 Spongiibacter marinus strain DSM 17750 Ga0415252_05, whole genome shotgun sequence 325,223
NZ_JAFBBD010000006.1 Spongiibacter marinus strain DSM 17750 Ga0415252_06, whole genome shotgun sequence 286,437
NZ_JAFBBD010000007.1 Spongiibacter marinus strain DSM 17750 Ga0415252_07, whole genome shotgun sequence 285,320
NZ_JAFBBD010000008.1 Spongiibacter marinus strain DSM 17750 Ga0415252_08, whole genome shotgun sequence 282,373
NZ_JAFBBD010000009.1 Spongiibacter marinus strain DSM 17750 Ga0415252_09, whole genome shotgun sequence 159,512
NZ_JAFBBD010000010.1 Spongiibacter marinus strain DSM 17750 Ga0415252_10, whole genome shotgun sequence 124,561
NZ_JAFBBD010000011.1 Spongiibacter marinus strain DSM 17750 Ga0415252_11, whole genome shotgun sequence 116,842
NZ_JAFBBD010000012.1 Spongiibacter marinus strain DSM 17750 Ga0415252_12, whole genome shotgun sequence 34,799
NZ_JAFBBD010000013.1 Spongiibacter marinus strain DSM 17750 Ga0415252_13, whole genome shotgun sequence 25,049
NZ_JAFBBD010000014.1 Spongiibacter marinus strain DSM 17750 Ga0415252_14, whole genome shotgun sequence 22,752
NZ_JAFBBD010000015.1 Spongiibacter marinus strain DSM 17750 Ga0415252_15, whole genome shotgun sequence 21,971
NZ_JAFBBD010000016.1 Spongiibacter marinus strain DSM 17750 Ga0415252_16, whole genome shotgun sequence 20,138
NZ_JAFBBD010000017.1 Spongiibacter marinus strain DSM 17750 Ga0415252_17, whole genome shotgun sequence 16,134
NZ_JAFBBD010000018.1 Spongiibacter marinus strain DSM 17750 Ga0415252_18, whole genome shotgun sequence 15,341
NZ_JAFBBD010000019.1 Spongiibacter marinus strain DSM 17750 Ga0415252_19, whole genome shotgun sequence 10,222
NZ_JAFBBD010000020.1 Spongiibacter marinus strain DSM 17750 Ga0415252_20, whole genome shotgun sequence 8,003
NZ_JAFBBD010000021.1 Spongiibacter marinus strain DSM 17750 Ga0415252_21, whole genome shotgun sequence 5,660
NZ_JAFBBD010000022.1 Spongiibacter marinus strain DSM 17750 Ga0415252_22, whole genome shotgun sequence 3,339
NZ_JAFBBD010000023.1 Spongiibacter marinus strain DSM 17750 Ga0415252_23, whole genome shotgun sequence 2,666
NZ_JAFBBD010000024.1 Spongiibacter marinus strain DSM 17750 Ga0415252_24, whole genome shotgun sequence 1,675
NZ_JAFBBD010000025.1 Spongiibacter marinus strain DSM 17750 Ga0415252_25, whole genome shotgun sequence 1,655
NZ_JAFBBD010000026.1 Spongiibacter marinus strain DSM 17750 Ga0415252_26, whole genome shotgun sequence 1,493
NZ_JAFBBD010000027.1 Spongiibacter marinus strain DSM 17750 Ga0415252_27, whole genome shotgun sequence 1,405
NZ_JAFBBD010000028.1 Spongiibacter marinus strain DSM 17750 Ga0415252_28, whole genome shotgun sequence 1,155
NZ_JAFBBD010000029.1 Spongiibacter marinus strain DSM 17750 Ga0415252_29, whole genome shotgun sequence 1,055

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory