fast.genomicscompare 6,575 genera of bacteria & archaea

 

Aestuariicoccus halocola KMU-90

Genome identifier: GCF_018224955.1

NCBI assembly name: ASM1822495v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Aestuariicoccus, Aestuariicoccus halocola

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Thetidibacter, Thetidibacter halocola

Scaffolds: 22

Genes: 4,533 Protein-coding: 4,363 RNAs: 51 pseudogenes: 119

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAGTUU010000001.1 Thetidibacter halocola strain KMU-90 contig1, whole genome shotgun sequence 955,912
NZ_JAGTUU010000002.1 Thetidibacter halocola strain KMU-90 contig2, whole genome shotgun sequence 599,099
NZ_JAGTUU010000003.1 Thetidibacter halocola strain KMU-90 contig3, whole genome shotgun sequence 593,505
NZ_JAGTUU010000004.1 Thetidibacter halocola strain KMU-90 contig4, whole genome shotgun sequence 549,061
NZ_JAGTUU010000005.1 Thetidibacter halocola strain KMU-90 contig5, whole genome shotgun sequence 427,950
NZ_JAGTUU010000006.1 Thetidibacter halocola strain KMU-90 contig6, whole genome shotgun sequence 351,922
NZ_JAGTUU010000007.1 Thetidibacter halocola strain KMU-90 contig7, whole genome shotgun sequence 311,152
NZ_JAGTUU010000008.1 Thetidibacter halocola strain KMU-90 contig8, whole genome shotgun sequence 277,329
NZ_JAGTUU010000009.1 Thetidibacter halocola strain KMU-90 contig9, whole genome shotgun sequence 237,009
NZ_JAGTUU010000010.1 Thetidibacter halocola strain KMU-90 contig10, whole genome shotgun sequence 201,919
NZ_JAGTUU010000011.1 Thetidibacter halocola strain KMU-90 contig11, whole genome shotgun sequence 114,737
NZ_JAGTUU010000012.1 Thetidibacter halocola strain KMU-90 contig12, whole genome shotgun sequence 86,668
NZ_JAGTUU010000013.1 Thetidibacter halocola strain KMU-90 contig13, whole genome shotgun sequence 67,249
NZ_JAGTUU010000014.1 Thetidibacter halocola strain KMU-90 contig14, whole genome shotgun sequence 33,192
NZ_JAGTUU010000015.1 Thetidibacter halocola strain KMU-90 contig15, whole genome shotgun sequence 14,636
NZ_JAGTUU010000016.1 Thetidibacter halocola strain KMU-90 contig16, whole genome shotgun sequence 6,584
NZ_JAGTUU010000017.1 Thetidibacter halocola strain KMU-90 contig17, whole genome shotgun sequence 6,430
NZ_JAGTUU010000018.1 Thetidibacter halocola strain KMU-90 contig18, whole genome shotgun sequence 2,852
NZ_JAGTUU010000019.1 Thetidibacter halocola strain KMU-90 contig19, whole genome shotgun sequence 2,132
NZ_JAGTUU010000020.1 Thetidibacter halocola strain KMU-90 contig20, whole genome shotgun sequence 2,076
NZ_JAGTUU010000021.1 Thetidibacter halocola strain KMU-90 contig21, whole genome shotgun sequence 1,884
NZ_JAGTUU010000022.1 Thetidibacter halocola strain KMU-90 contig22, whole genome shotgun sequence 1,285

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory