fast.genomicscompare 6,575 genera of bacteria & archaea

 

Carboxylicivirga mesophila JCM 18290

Genome identifier: GCF_018271975.1

NCBI assembly name: ASM1827197v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Marinilabiliaceae, Carboxylicivirga, Carboxylicivirga mesophila

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Marinilabiliales, Marinilabiliaceae, Carboxylicivirga, Carboxylicivirga mesophila

Scaffolds: 87

Genes: 4,375 Protein-coding: 4,300 RNAs: 64 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAGUCN010000001.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_1_length=522484, whole genome shotgun sequence 522,483
NZ_JAGUCN010000002.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_2_length=437426, whole genome shotgun sequence 437,425
NZ_JAGUCN010000003.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_3_length=253170, whole genome shotgun sequence 253,169
NZ_JAGUCN010000004.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_4_length=249625, whole genome shotgun sequence 249,624
NZ_JAGUCN010000005.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_5_length=241928, whole genome shotgun sequence 241,927
NZ_JAGUCN010000006.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_6_length=232718, whole genome shotgun sequence 232,717
NZ_JAGUCN010000007.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_7_length=209496, whole genome shotgun sequence 209,495
NZ_JAGUCN010000008.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_8_length=209019, whole genome shotgun sequence 209,018
NZ_JAGUCN010000009.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_9_length=189921, whole genome shotgun sequence 189,920
NZ_JAGUCN010000010.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_10_length=183729, whole genome shotgun sequence 183,728
NZ_JAGUCN010000011.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_11_length=181738, whole genome shotgun sequence 181,737
NZ_JAGUCN010000012.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_12_length=168381, whole genome shotgun sequence 168,380
NZ_JAGUCN010000013.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_13_length=157289, whole genome shotgun sequence 157,288
NZ_JAGUCN010000014.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_14_length=151607, whole genome shotgun sequence 151,606
NZ_JAGUCN010000015.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_15_length=150757, whole genome shotgun sequence 150,756
NZ_JAGUCN010000016.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_16_length=149617, whole genome shotgun sequence 149,616
NZ_JAGUCN010000017.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_17_length=144434, whole genome shotgun sequence 144,433
NZ_JAGUCN010000018.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_18_length=129159, whole genome shotgun sequence 129,158
NZ_JAGUCN010000019.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_19_length=128529, whole genome shotgun sequence 128,528
NZ_JAGUCN010000020.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_20_length=125128, whole genome shotgun sequence 125,127
NZ_JAGUCN010000021.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_21_length=117544, whole genome shotgun sequence 117,543
NZ_JAGUCN010000022.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_22_length=110757, whole genome shotgun sequence 110,756
NZ_JAGUCN010000023.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_23_length=81166, whole genome shotgun sequence 81,165
NZ_JAGUCN010000024.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_24_length=80358, whole genome shotgun sequence 80,357
NZ_JAGUCN010000025.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_25_length=77292, whole genome shotgun sequence 77,291
NZ_JAGUCN010000026.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_26_length=71222, whole genome shotgun sequence 71,221
NZ_JAGUCN010000027.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_27_length=69697, whole genome shotgun sequence 69,696
NZ_JAGUCN010000028.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_28_length=69476, whole genome shotgun sequence 69,475
NZ_JAGUCN010000029.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_29_length=65675, whole genome shotgun sequence 65,674
NZ_JAGUCN010000030.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_30_length=64314, whole genome shotgun sequence 64,313
NZ_JAGUCN010000031.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_31_length=59350, whole genome shotgun sequence 59,349
NZ_JAGUCN010000032.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_32_length=56744, whole genome shotgun sequence 56,743
NZ_JAGUCN010000033.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_33_length=52124, whole genome shotgun sequence 52,123
NZ_JAGUCN010000034.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_34_length=49922, whole genome shotgun sequence 49,921
NZ_JAGUCN010000035.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_35_length=49146, whole genome shotgun sequence 49,145
NZ_JAGUCN010000036.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_36_length=47094, whole genome shotgun sequence 47,093
NZ_JAGUCN010000037.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_37_length=45304, whole genome shotgun sequence 45,303
NZ_JAGUCN010000038.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_38_length=40362, whole genome shotgun sequence 40,361
NZ_JAGUCN010000039.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_39_length=37450, whole genome shotgun sequence 37,449
NZ_JAGUCN010000040.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_40_length=36821, whole genome shotgun sequence 36,820
NZ_JAGUCN010000041.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_41_length=20985, whole genome shotgun sequence 20,984
NZ_JAGUCN010000042.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_42_length=20690, whole genome shotgun sequence 20,689
NZ_JAGUCN010000043.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_43_length=12242, whole genome shotgun sequence 12,241
NZ_JAGUCN010000044.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_44_length=10424, whole genome shotgun sequence 10,423
NZ_JAGUCN010000045.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_45_length=10198, whole genome shotgun sequence 10,197
NZ_JAGUCN010000046.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_46_length=9077, whole genome shotgun sequence 9,076
NZ_JAGUCN010000047.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_47_length=6397, whole genome shotgun sequence 6,396
NZ_JAGUCN010000048.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_48_length=6133, whole genome shotgun sequence 6,132
NZ_JAGUCN010000049.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_49_length=5992, whole genome shotgun sequence 5,991
NZ_JAGUCN010000050.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_50_length=5437, whole genome shotgun sequence 5,436
NZ_JAGUCN010000051.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_51_length=3393, whole genome shotgun sequence 3,392
NZ_JAGUCN010000052.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_52_length=2917, whole genome shotgun sequence 2,916
NZ_JAGUCN010000053.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_53_length=2897, whole genome shotgun sequence 2,896
NZ_JAGUCN010000054.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_54_length=2656, whole genome shotgun sequence 2,655
NZ_JAGUCN010000055.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_55_length=1908, whole genome shotgun sequence 1,907
NZ_JAGUCN010000056.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_56_length=1866, whole genome shotgun sequence 1,865
NZ_JAGUCN010000057.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_57_length=1866, whole genome shotgun sequence 1,865
NZ_JAGUCN010000058.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_58_length=1776, whole genome shotgun sequence 1,775
NZ_JAGUCN010000059.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_59_length=1762, whole genome shotgun sequence 1,761
NZ_JAGUCN010000060.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_60_length=1709, whole genome shotgun sequence 1,708
NZ_JAGUCN010000061.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_61_length=1645, whole genome shotgun sequence 1,644
NZ_JAGUCN010000062.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_62_length=1619, whole genome shotgun sequence 1,618
NZ_JAGUCN010000063.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_63_length=1618, whole genome shotgun sequence 1,617
NZ_JAGUCN010000064.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_64_length=1451, whole genome shotgun sequence 1,450
NZ_JAGUCN010000065.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_65_length=1412, whole genome shotgun sequence 1,411
NZ_JAGUCN010000066.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_66_length=1318, whole genome shotgun sequence 1,317
NZ_JAGUCN010000067.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_67_length=1258, whole genome shotgun sequence 1,257
NZ_JAGUCN010000068.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_68_length=1222, whole genome shotgun sequence 1,221
NZ_JAGUCN010000069.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_69_length=1038, whole genome shotgun sequence 1,037
NZ_JAGUCN010000070.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_70_length=950, whole genome shotgun sequence 949
NZ_JAGUCN010000071.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_71_length=941, whole genome shotgun sequence 940
NZ_JAGUCN010000072.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_72_length=879, whole genome shotgun sequence 878
NZ_JAGUCN010000073.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_73_length=783, whole genome shotgun sequence 782
NZ_JAGUCN010000074.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_74_length=730, whole genome shotgun sequence 729
NZ_JAGUCN010000075.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_75_length=664, whole genome shotgun sequence 663
NZ_JAGUCN010000076.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_76_length=585, whole genome shotgun sequence 584
NZ_JAGUCN010000077.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_77_length=526, whole genome shotgun sequence 525
NZ_JAGUCN010000078.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_78_length=510, whole genome shotgun sequence 509
NZ_JAGUCN010000079.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_79_length=460, whole genome shotgun sequence 459
NZ_JAGUCN010000080.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_80_length=429, whole genome shotgun sequence 428
NZ_JAGUCN010000081.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_81_length=417, whole genome shotgun sequence 416
NZ_JAGUCN010000082.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_82_length=402, whole genome shotgun sequence 401
NZ_JAGUCN010000083.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_83_length=392, whole genome shotgun sequence 391
NZ_JAGUCN010000084.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_84_length=390, whole genome shotgun sequence 389
NZ_JAGUCN010000085.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_85_length=363, whole genome shotgun sequence 362
NZ_JAGUCN010000086.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_86_length=363, whole genome shotgun sequence 362
NZ_JAGUCN010000087.1 Carboxylicivirga mesophila strain JCM 18290 scaffold_87_length=316, whole genome shotgun sequence 315

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory