fast.genomicscompare 6,575 genera of bacteria & archaea

 

Halomarinibacterium sedimenti CAU 1614

Genome identifier: GCF_019312585.1

NCBI assembly name: ASM1931258v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Halomarinibacterium, Halomarinibacterium sedimenti

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Halomarinibacterium, Halomarinibacterium sedimenti

Scaffolds: 15

Genes: 2,731 Protein-coding: 2,679 RNAs: 42 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAHWDP010000001.1 Halomarinibacterium sedimenti strain CAU 1614 contig1, whole genome shotgun sequence 985,717
NZ_JAHWDP010000002.1 Halomarinibacterium sedimenti strain CAU 1614 contig2, whole genome shotgun sequence 580,342
NZ_JAHWDP010000003.1 Halomarinibacterium sedimenti strain CAU 1614 contig3, whole genome shotgun sequence 579,447
NZ_JAHWDP010000004.1 Halomarinibacterium sedimenti strain CAU 1614 contig4, whole genome shotgun sequence 254,343
NZ_JAHWDP010000005.1 Halomarinibacterium sedimenti strain CAU 1614 contig5, whole genome shotgun sequence 216,539
NZ_JAHWDP010000006.1 Halomarinibacterium sedimenti strain CAU 1614 contig6, whole genome shotgun sequence 100,195
NZ_JAHWDP010000007.1 Halomarinibacterium sedimenti strain CAU 1614 contig7, whole genome shotgun sequence 99,697
NZ_JAHWDP010000008.1 Halomarinibacterium sedimenti strain CAU 1614 contig8, whole genome shotgun sequence 76,188
NZ_JAHWDP010000009.1 Halomarinibacterium sedimenti strain CAU 1614 contig9, whole genome shotgun sequence 29,413
NZ_JAHWDP010000010.1 Halomarinibacterium sedimenti strain CAU 1614 contig10, whole genome shotgun sequence 18,763
NZ_JAHWDP010000011.1 Halomarinibacterium sedimenti strain CAU 1614 contig11, whole genome shotgun sequence 5,367
NZ_JAHWDP010000012.1 Halomarinibacterium sedimenti strain CAU 1614 contig12, whole genome shotgun sequence 4,094
NZ_JAHWDP010000013.1 Halomarinibacterium sedimenti strain CAU 1614 contig13, whole genome shotgun sequence 3,715
NZ_JAHWDP010000014.1 Halomarinibacterium sedimenti strain CAU 1614 contig14, whole genome shotgun sequence 2,536
NZ_JAHWDP010000015.1 Halomarinibacterium sedimenti strain CAU 1614 contig15, whole genome shotgun sequence 1,184

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory