fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudaquidulcibacter saccharophilus SZ9

Genome identifier: GCF_019455445.1

NCBI assembly name: ASM1945544v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, TH1-2, Pseudaquidulcibacter, Pseudaquidulcibacter saccharophilus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Caulobacteraceae, Pseudaquidulcibacter, Pseudaquidulcibacter saccharophilus

Scaffolds: 12

Genes: 2,686 Protein-coding: 2,631 RNAs: 43 pseudogenes: 12

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAHWUS010000001.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_1_length_1201554_cov_122.201296, whole genome shotgun sequence 1,201,554
NZ_JAHWUS010000002.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_2_length_603290_cov_92.093229, whole genome shotgun sequence 603,290
NZ_JAHWUS010000003.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_3_length_598280_cov_93.567116, whole genome shotgun sequence 598,280
NZ_JAHWUS010000004.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_4_length_147742_cov_123.525265, whole genome shotgun sequence 147,742
NZ_JAHWUS010000005.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_5_length_106791_cov_124.174679, whole genome shotgun sequence 106,791
NZ_JAHWUS010000006.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_6_length_72233_cov_128.869969, whole genome shotgun sequence 72,233
NZ_JAHWUS010000007.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_7_length_62934_cov_115.890363, whole genome shotgun sequence 62,934
NZ_JAHWUS010000008.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_8_length_40682_cov_118.004660, whole genome shotgun sequence 40,682
NZ_JAHWUS010000009.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_9_length_5776_cov_215.876438, whole genome shotgun sequence 5,776
NZ_JAHWUS010000010.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_10_length_1133_cov_183.679920, whole genome shotgun sequence 1,133
NZ_JAHWUS010000011.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_11_length_674_cov_220.784278, whole genome shotgun sequence 674
NZ_JAHWUS010000012.1 Pseudaquidulcibacter saccharophilus strain SZ9 NODE_12_length_656_cov_233.007561, whole genome shotgun sequence 656

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory