fast.genomicscompare 6,575 genera of bacteria & archaea

 

Flavimaribacter sediminis WL0058

Genome identifier: GCF_019492055.1

NCBI assembly name: ASM1949205v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Flavimaribacter, Flavimaribacter sediminis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae, Flavimaribacter, Flavimaribacter sediminis

Scaffolds: 13

Genes: 5,390 Protein-coding: 5,182 RNAs: 52 pseudogenes: 156

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAICBX010000001.1 Flavimaribacter sediminis strain WL0058 NODE_1_length_1722695_cov_35.197168, whole genome shotgun sequence 1,722,695
NZ_JAICBX010000002.1 Flavimaribacter sediminis strain WL0058 NODE_2_length_1583138_cov_38.105322, whole genome shotgun sequence 1,583,138
NZ_JAICBX010000003.1 Flavimaribacter sediminis strain WL0058 NODE_3_length_713044_cov_37.728677, whole genome shotgun sequence 713,044
NZ_JAICBX010000004.1 Flavimaribacter sediminis strain WL0058 NODE_4_length_612028_cov_35.123285, whole genome shotgun sequence 612,028
NZ_JAICBX010000005.1 Flavimaribacter sediminis strain WL0058 NODE_5_length_489404_cov_36.594657, whole genome shotgun sequence 489,404
NZ_JAICBX010000006.1 Flavimaribacter sediminis strain WL0058 NODE_6_length_243616_cov_34.066258, whole genome shotgun sequence 243,616
NZ_JAICBX010000007.1 Flavimaribacter sediminis strain WL0058 NODE_7_length_149667_cov_38.539702, whole genome shotgun sequence 149,667
NZ_JAICBX010000008.1 Flavimaribacter sediminis strain WL0058 NODE_8_length_83411_cov_37.021469, whole genome shotgun sequence 83,411
NZ_JAICBX010000009.1 Flavimaribacter sediminis strain WL0058 NODE_9_length_82635_cov_38.092670, whole genome shotgun sequence 82,635
NZ_JAICBX010000010.1 Flavimaribacter sediminis strain WL0058 NODE_10_length_6294_cov_71.818064, whole genome shotgun sequence 6,294
NZ_JAICBX010000011.1 Flavimaribacter sediminis strain WL0058 NODE_11_length_3646_cov_36.289571, whole genome shotgun sequence 3,646
NZ_JAICBX010000012.1 Flavimaribacter sediminis strain WL0058 NODE_13_length_1054_cov_68.174757, whole genome shotgun sequence 1,054
NZ_JAICBX010000013.1 Flavimaribacter sediminis strain WL0058 NODE_15_length_733_cov_72.165017, whole genome shotgun sequence 733

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory