fast.genomicscompare 6,575 genera of bacteria & archaea

 

Roseibacterium sp019800885 DP3N28-3

Genome identifier: GCF_019800885.1

NCBI assembly name: ASM1980088v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Roseibacterium, Roseibacterium sp019800885

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Devosiaceae, Maritalea, Maritalea mobilis

Scaffolds: 14

Genes: 3,601 Protein-coding: 3,516 RNAs: 52 pseudogenes: 33

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAHVKE010000001.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0001, whole genome shotgun sequence 1,811,786
NZ_JAHVKE010000002.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0002, whole genome shotgun sequence 969,400
NZ_JAHVKE010000003.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0003, whole genome shotgun sequence 155,682
NZ_JAHVKE010000004.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0004, whole genome shotgun sequence 315,910
NZ_JAHVKE010000005.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0005, whole genome shotgun sequence 202,632
NZ_JAHVKE010000006.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0006, whole genome shotgun sequence 126,167
NZ_JAHVKE010000007.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0007, whole genome shotgun sequence 46,246
NZ_JAHVKE010000008.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0008, whole genome shotgun sequence 19,259
NZ_JAHVKE010000009.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0009, whole genome shotgun sequence 10,060
NZ_JAHVKE010000010.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0010, whole genome shotgun sequence 6,418
NZ_JAHVKE010000011.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0011, whole genome shotgun sequence 5,974
NZ_JAHVKE010000012.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0041, whole genome shotgun sequence 1,233
NZ_JAHVKE010000013.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0071, whole genome shotgun sequence 1,027
NZ_JAHVKE010000014.1 Maritalea mobilis strain DP3N28-3 DP3N28-3_ctg0394, whole genome shotgun sequence 604

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory