fast.genomicscompare 6,575 genera of bacteria & archaea

 

Heliomarina baculiformis T40-3

Genome identifier: GCF_019966545.1

NCBI assembly name: ASM1996654v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Heliomarina, Heliomarina baculiformis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Heliomarina, Heliomarina baculiformis

Scaffolds: 36

Genes: 5,036 Protein-coding: 4,946 RNAs: 48 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAIMIC010000001.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold1_length_757526_cov_190.953106, whole genome shotgun sequence 757,526
NZ_JAIMIC010000002.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold2_length_738631_cov_198.014268, whole genome shotgun sequence 738,631
NZ_JAIMIC010000003.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold3_length_583827_cov_204.459573, whole genome shotgun sequence 583,827
NZ_JAIMIC010000004.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold4_length_486872_cov_201.896262, whole genome shotgun sequence 486,872
NZ_JAIMIC010000005.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold5_length_471812_cov_180.380459, whole genome shotgun sequence 471,812
NZ_JAIMIC010000006.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold6_length_421489_cov_206.363134, whole genome shotgun sequence 421,489
NZ_JAIMIC010000007.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold7_length_364643_cov_209.489914, whole genome shotgun sequence 364,643
NZ_JAIMIC010000008.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold8_length_341256_cov_205.201252, whole genome shotgun sequence 341,256
NZ_JAIMIC010000009.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold9_length_143218_cov_198.636142, whole genome shotgun sequence 143,218
NZ_JAIMIC010000010.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold10_length_113111_cov_210.004945, whole genome shotgun sequence 113,111
NZ_JAIMIC010000011.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold11_length_111945_cov_200.611739, whole genome shotgun sequence 111,945
NZ_JAIMIC010000012.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold12_length_102124_cov_208.952012, whole genome shotgun sequence 102,124
NZ_JAIMIC010000013.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold13_length_99347_cov_157.759142, whole genome shotgun sequence 99,347
NZ_JAIMIC010000014.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold14_length_64098_cov_203.694022, whole genome shotgun sequence 64,098
NZ_JAIMIC010000015.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold15_length_62752_cov_208.302353, whole genome shotgun sequence 62,752
NZ_JAIMIC010000016.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold16_length_59588_cov_146.415604, whole genome shotgun sequence 59,588
NZ_JAIMIC010000017.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold17_length_57236_cov_312.370913, whole genome shotgun sequence 57,236
NZ_JAIMIC010000018.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold18_length_56144_cov_183.834930, whole genome shotgun sequence 56,144
NZ_JAIMIC010000019.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold19_length_45475_cov_206.588396, whole genome shotgun sequence 45,475
NZ_JAIMIC010000020.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold20_length_44148_cov_211.934742, whole genome shotgun sequence 44,148
NZ_JAIMIC010000021.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold21_length_35906_cov_204.075274, whole genome shotgun sequence 35,906
NZ_JAIMIC010000022.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold22_length_28260_cov_209.003690, whole genome shotgun sequence 28,260
NZ_JAIMIC010000023.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold23_length_25805_cov_158.640586, whole genome shotgun sequence 25,805
NZ_JAIMIC010000024.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold24_length_20964_cov_187.401829, whole genome shotgun sequence 20,964
NZ_JAIMIC010000025.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold25_length_18906_cov_147.622710, whole genome shotgun sequence 18,906
NZ_JAIMIC010000026.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold26_length_18365_cov_749.963145, whole genome shotgun sequence 18,365
NZ_JAIMIC010000027.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold27_length_10574_cov_183.271030, whole genome shotgun sequence 10,574
NZ_JAIMIC010000028.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold28_length_10138_cov_152.474804, whole genome shotgun sequence 10,138
NZ_JAIMIC010000029.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold29_length_8765_cov_142.740216, whole genome shotgun sequence 8,765
NZ_JAIMIC010000030.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold30_length_6268_cov_204.994508, whole genome shotgun sequence 6,268
NZ_JAIMIC010000031.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold31_length_6023_cov_396.311974, whole genome shotgun sequence 6,023
NZ_JAIMIC010000032.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold32_length_5216_cov_182.373419, whole genome shotgun sequence 5,216
NZ_JAIMIC010000033.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold33_length_3767_cov_504.808672, whole genome shotgun sequence 3,767
NZ_JAIMIC010000034.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold34_length_3716_cov_368.346799, whole genome shotgun sequence 3,716
NZ_JAIMIC010000035.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold35_length_3110_cov_208.178701, whole genome shotgun sequence 3,110
NZ_JAIMIC010000036.1 Heliomarina baculiformis strain T40-3 T40-3_Scaffold36_length_2759_cov_561.454512, whole genome shotgun sequence 2,759

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory