fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAIUZI01 sp020171285 DP4N-5

Genome identifier: GCF_020171285.1

NCBI assembly name: ASM2017128v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, JAIUZI01, JAIUZI01 sp020171285

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Seohaeicola, Seohaeicola saemankumensis

Scaffolds: 44

Genes: 4,910 Protein-coding: 4,803 RNAs: 50 pseudogenes: 57

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAIUZI010000001.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg001, whole genome shotgun sequence 781,228
NZ_JAIUZI010000002.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg002, whole genome shotgun sequence 458,720
NZ_JAIUZI010000003.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg003, whole genome shotgun sequence 447,742
NZ_JAIUZI010000004.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg004, whole genome shotgun sequence 439,424
NZ_JAIUZI010000005.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg005, whole genome shotgun sequence 244,422
NZ_JAIUZI010000006.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg006, whole genome shotgun sequence 187,932
NZ_JAIUZI010000007.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg007, whole genome shotgun sequence 308,185
NZ_JAIUZI010000008.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg008, whole genome shotgun sequence 289,467
NZ_JAIUZI010000009.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg009, whole genome shotgun sequence 280,648
NZ_JAIUZI010000010.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg010, whole genome shotgun sequence 258,969
NZ_JAIUZI010000011.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg011, whole genome shotgun sequence 234,008
NZ_JAIUZI010000012.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg012, whole genome shotgun sequence 202,172
NZ_JAIUZI010000013.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg013, whole genome shotgun sequence 142,178
NZ_JAIUZI010000014.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg014, whole genome shotgun sequence 11,988
NZ_JAIUZI010000015.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg015, whole genome shotgun sequence 153,599
NZ_JAIUZI010000016.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg016, whole genome shotgun sequence 103,870
NZ_JAIUZI010000017.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg017, whole genome shotgun sequence 89,609
NZ_JAIUZI010000018.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg018, whole genome shotgun sequence 61,281
NZ_JAIUZI010000019.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg019, whole genome shotgun sequence 3,992
NZ_JAIUZI010000020.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg020, whole genome shotgun sequence 64,249
NZ_JAIUZI010000021.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg021, whole genome shotgun sequence 44,715
NZ_JAIUZI010000022.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg022, whole genome shotgun sequence 43,720
NZ_JAIUZI010000023.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg023, whole genome shotgun sequence 41,840
NZ_JAIUZI010000024.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg024, whole genome shotgun sequence 36,269
NZ_JAIUZI010000025.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg025, whole genome shotgun sequence 30,469
NZ_JAIUZI010000026.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg026, whole genome shotgun sequence 26,101
NZ_JAIUZI010000027.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg027, whole genome shotgun sequence 21,409
NZ_JAIUZI010000028.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg028, whole genome shotgun sequence 20,879
NZ_JAIUZI010000029.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg029, whole genome shotgun sequence 20,772
NZ_JAIUZI010000030.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg030, whole genome shotgun sequence 16,451
NZ_JAIUZI010000031.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg031, whole genome shotgun sequence 9,495
NZ_JAIUZI010000032.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg032, whole genome shotgun sequence 6,447
NZ_JAIUZI010000033.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg033, whole genome shotgun sequence 6,181
NZ_JAIUZI010000034.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg034, whole genome shotgun sequence 1,532
NZ_JAIUZI010000035.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg035, whole genome shotgun sequence 1,412
NZ_JAIUZI010000036.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg036, whole genome shotgun sequence 1,342
NZ_JAIUZI010000037.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg037, whole genome shotgun sequence 1,042
NZ_JAIUZI010000038.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg038, whole genome shotgun sequence 1,005
NZ_JAIUZI010000039.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg039, whole genome shotgun sequence 798
NZ_JAIUZI010000040.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg040, whole genome shotgun sequence 772
NZ_JAIUZI010000041.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg041, whole genome shotgun sequence 698
NZ_JAIUZI010000042.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg042, whole genome shotgun sequence 658
NZ_JAIUZI010000043.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg043, whole genome shotgun sequence 568
NZ_JAIUZI010000044.1 Seohaeicola saemankumensis strain DP4N-5 DP4N-5_ctg044, whole genome shotgun sequence 523

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory