fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudemcibacter aquimaris Y4

Genome identifier: GCF_020748165.1

NCBI assembly name: ASM2074816v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Emcibacteraceae, Pseudemcibacter, Pseudemcibacter aquimaris

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Emcibacterales, Emcibacteraceae, Pseudemcibacter, Pseudemcibacter aquimaris

Scaffolds: 62

Genes: 3,184 Protein-coding: 3,119 RNAs: 51 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAJEJX010000001.1 Pseudemcibacter aquimaris strain Y4 contig1, whole genome shotgun sequence 595,603
NZ_JAJEJX010000002.1 Pseudemcibacter aquimaris strain Y4 contig2, whole genome shotgun sequence 353,129
NZ_JAJEJX010000003.1 Pseudemcibacter aquimaris strain Y4 contig3, whole genome shotgun sequence 767,765
NZ_JAJEJX010000004.1 Pseudemcibacter aquimaris strain Y4 contig4, whole genome shotgun sequence 666,628
NZ_JAJEJX010000005.1 Pseudemcibacter aquimaris strain Y4 contig5, whole genome shotgun sequence 13,167
NZ_JAJEJX010000006.1 Pseudemcibacter aquimaris strain Y4 contig6, whole genome shotgun sequence 585,153
NZ_JAJEJX010000007.1 Pseudemcibacter aquimaris strain Y4 contig7, whole genome shotgun sequence 170,321
NZ_JAJEJX010000008.1 Pseudemcibacter aquimaris strain Y4 contig8, whole genome shotgun sequence 53,623
NZ_JAJEJX010000009.1 Pseudemcibacter aquimaris strain Y4 contig9, whole genome shotgun sequence 990
NZ_JAJEJX010000010.1 Pseudemcibacter aquimaris strain Y4 contig10, whole genome shotgun sequence 52,370
NZ_JAJEJX010000011.1 Pseudemcibacter aquimaris strain Y4 contig11, whole genome shotgun sequence 40,382
NZ_JAJEJX010000012.1 Pseudemcibacter aquimaris strain Y4 contig12, whole genome shotgun sequence 15,623
NZ_JAJEJX010000013.1 Pseudemcibacter aquimaris strain Y4 contig13, whole genome shotgun sequence 5,663
NZ_JAJEJX010000014.1 Pseudemcibacter aquimaris strain Y4 contig14, whole genome shotgun sequence 4,042
NZ_JAJEJX010000015.1 Pseudemcibacter aquimaris strain Y4 contig15, whole genome shotgun sequence 3,088
NZ_JAJEJX010000016.1 Pseudemcibacter aquimaris strain Y4 contig16, whole genome shotgun sequence 642
NZ_JAJEJX010000017.1 Pseudemcibacter aquimaris strain Y4 contig17, whole genome shotgun sequence 3,291
NZ_JAJEJX010000018.1 Pseudemcibacter aquimaris strain Y4 contig18, whole genome shotgun sequence 3,180
NZ_JAJEJX010000019.1 Pseudemcibacter aquimaris strain Y4 contig19, whole genome shotgun sequence 1,319
NZ_JAJEJX010000020.1 Pseudemcibacter aquimaris strain Y4 contig20, whole genome shotgun sequence 214
NZ_JAJEJX010000021.1 Pseudemcibacter aquimaris strain Y4 contig21, whole genome shotgun sequence 1,489
NZ_JAJEJX010000022.1 Pseudemcibacter aquimaris strain Y4 contig22, whole genome shotgun sequence 1,870
NZ_JAJEJX010000023.1 Pseudemcibacter aquimaris strain Y4 contig23, whole genome shotgun sequence 1,066
NZ_JAJEJX010000024.1 Pseudemcibacter aquimaris strain Y4 contig24, whole genome shotgun sequence 1,751
NZ_JAJEJX010000025.1 Pseudemcibacter aquimaris strain Y4 contig25, whole genome shotgun sequence 516
NZ_JAJEJX010000026.1 Pseudemcibacter aquimaris strain Y4 contig26, whole genome shotgun sequence 1,074
NZ_JAJEJX010000027.1 Pseudemcibacter aquimaris strain Y4 contig27, whole genome shotgun sequence 1,521
NZ_JAJEJX010000028.1 Pseudemcibacter aquimaris strain Y4 contig28, whole genome shotgun sequence 1,304
NZ_JAJEJX010000029.1 Pseudemcibacter aquimaris strain Y4 contig29, whole genome shotgun sequence 1,031
NZ_JAJEJX010000030.1 Pseudemcibacter aquimaris strain Y4 contig30, whole genome shotgun sequence 243
NZ_JAJEJX010000031.1 Pseudemcibacter aquimaris strain Y4 contig31, whole genome shotgun sequence 1,202
NZ_JAJEJX010000032.1 Pseudemcibacter aquimaris strain Y4 contig32, whole genome shotgun sequence 1,180
NZ_JAJEJX010000033.1 Pseudemcibacter aquimaris strain Y4 contig33, whole genome shotgun sequence 540
NZ_JAJEJX010000034.1 Pseudemcibacter aquimaris strain Y4 contig34, whole genome shotgun sequence 395
NZ_JAJEJX010000035.1 Pseudemcibacter aquimaris strain Y4 contig35, whole genome shotgun sequence 788
NZ_JAJEJX010000036.1 Pseudemcibacter aquimaris strain Y4 contig36, whole genome shotgun sequence 305
NZ_JAJEJX010000037.1 Pseudemcibacter aquimaris strain Y4 contig37, whole genome shotgun sequence 414
NZ_JAJEJX010000038.1 Pseudemcibacter aquimaris strain Y4 contig38, whole genome shotgun sequence 471
NZ_JAJEJX010000039.1 Pseudemcibacter aquimaris strain Y4 contig39, whole genome shotgun sequence 236
NZ_JAJEJX010000040.1 Pseudemcibacter aquimaris strain Y4 contig40, whole genome shotgun sequence 407
NZ_JAJEJX010000041.1 Pseudemcibacter aquimaris strain Y4 contig41, whole genome shotgun sequence 296
NZ_JAJEJX010000042.1 Pseudemcibacter aquimaris strain Y4 contig42, whole genome shotgun sequence 663
NZ_JAJEJX010000043.1 Pseudemcibacter aquimaris strain Y4 contig43, whole genome shotgun sequence 384
NZ_JAJEJX010000044.1 Pseudemcibacter aquimaris strain Y4 contig44, whole genome shotgun sequence 246
NZ_JAJEJX010000045.1 Pseudemcibacter aquimaris strain Y4 contig45, whole genome shotgun sequence 614
NZ_JAJEJX010000046.1 Pseudemcibacter aquimaris strain Y4 contig46, whole genome shotgun sequence 251
NZ_JAJEJX010000047.1 Pseudemcibacter aquimaris strain Y4 contig47, whole genome shotgun sequence 352
NZ_JAJEJX010000048.1 Pseudemcibacter aquimaris strain Y4 contig48, whole genome shotgun sequence 571
NZ_JAJEJX010000049.1 Pseudemcibacter aquimaris strain Y4 contig49, whole genome shotgun sequence 258
NZ_JAJEJX010000050.1 Pseudemcibacter aquimaris strain Y4 contig50, whole genome shotgun sequence 223
NZ_JAJEJX010000051.1 Pseudemcibacter aquimaris strain Y4 contig51, whole genome shotgun sequence 524
NZ_JAJEJX010000052.1 Pseudemcibacter aquimaris strain Y4 contig52, whole genome shotgun sequence 521
NZ_JAJEJX010000053.1 Pseudemcibacter aquimaris strain Y4 contig53, whole genome shotgun sequence 497
NZ_JAJEJX010000054.1 Pseudemcibacter aquimaris strain Y4 contig54, whole genome shotgun sequence 464
NZ_JAJEJX010000055.1 Pseudemcibacter aquimaris strain Y4 contig55, whole genome shotgun sequence 444
NZ_JAJEJX010000056.1 Pseudemcibacter aquimaris strain Y4 contig56, whole genome shotgun sequence 411
NZ_JAJEJX010000057.1 Pseudemcibacter aquimaris strain Y4 contig57, whole genome shotgun sequence 369
NZ_JAJEJX010000058.1 Pseudemcibacter aquimaris strain Y4 contig58, whole genome shotgun sequence 362
NZ_JAJEJX010000059.1 Pseudemcibacter aquimaris strain Y4 contig59, whole genome shotgun sequence 350
NZ_JAJEJX010000060.1 Pseudemcibacter aquimaris strain Y4 contig60, whole genome shotgun sequence 346
NZ_JAJEJX010000061.1 Pseudemcibacter aquimaris strain Y4 contig61, whole genome shotgun sequence 336
NZ_JAJEJX010000062.1 Pseudemcibacter aquimaris strain Y4 contig62, whole genome shotgun sequence 313

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory