fast.genomicscompare 6,575 genera of bacteria & archaea

 

EhC02 sp021021435 IOP_23

Genome identifier: GCF_021021435.1

NCBI assembly name: ASM2102143v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, EhC02, EhC02 sp021021435

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Seohaeicola, Seohaeicola saemankumensis

Scaffolds: 75

Genes: 4,016 Protein-coding: 3,907 RNAs: 47 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAINWI010000001.1 Seohaeicola saemankumensis strain IOP_23 contig1, whole genome shotgun sequence 22,375
NZ_JAINWI010000002.1 Seohaeicola saemankumensis strain IOP_23 contig2, whole genome shotgun sequence 3,151
NZ_JAINWI010000003.1 Seohaeicola saemankumensis strain IOP_23 contig3, whole genome shotgun sequence 350,721
NZ_JAINWI010000004.1 Seohaeicola saemankumensis strain IOP_23 contig4, whole genome shotgun sequence 344,701
NZ_JAINWI010000005.1 Seohaeicola saemankumensis strain IOP_23 contig5, whole genome shotgun sequence 329,236
NZ_JAINWI010000006.1 Seohaeicola saemankumensis strain IOP_23 contig6, whole genome shotgun sequence 463
NZ_JAINWI010000007.1 Seohaeicola saemankumensis strain IOP_23 contig7, whole genome shotgun sequence 1,391
NZ_JAINWI010000008.1 Seohaeicola saemankumensis strain IOP_23 contig8, whole genome shotgun sequence 13,146
NZ_JAINWI010000009.1 Seohaeicola saemankumensis strain IOP_23 contig9, whole genome shotgun sequence 309,951
NZ_JAINWI010000010.1 Seohaeicola saemankumensis strain IOP_23 contig10, whole genome shotgun sequence 322,360
NZ_JAINWI010000011.1 Seohaeicola saemankumensis strain IOP_23 contig11, whole genome shotgun sequence 308,275
NZ_JAINWI010000012.1 Seohaeicola saemankumensis strain IOP_23 contig12, whole genome shotgun sequence 274,788
NZ_JAINWI010000013.1 Seohaeicola saemankumensis strain IOP_23 contig13, whole genome shotgun sequence 262,852
NZ_JAINWI010000014.1 Seohaeicola saemankumensis strain IOP_23 contig14, whole genome shotgun sequence 253,862
NZ_JAINWI010000015.1 Seohaeicola saemankumensis strain IOP_23 contig15, whole genome shotgun sequence 228,187
NZ_JAINWI010000016.1 Seohaeicola saemankumensis strain IOP_23 contig16, whole genome shotgun sequence 185,947
NZ_JAINWI010000017.1 Seohaeicola saemankumensis strain IOP_23 contig17, whole genome shotgun sequence 153,233
NZ_JAINWI010000018.1 Seohaeicola saemankumensis strain IOP_23 contig18, whole genome shotgun sequence 118,323
NZ_JAINWI010000019.1 Seohaeicola saemankumensis strain IOP_23 contig19, whole genome shotgun sequence 96,131
NZ_JAINWI010000020.1 Seohaeicola saemankumensis strain IOP_23 contig20, whole genome shotgun sequence 80,597
NZ_JAINWI010000021.1 Seohaeicola saemankumensis strain IOP_23 contig21, whole genome shotgun sequence 13,507
NZ_JAINWI010000022.1 Seohaeicola saemankumensis strain IOP_23 contig22, whole genome shotgun sequence 65,998
NZ_JAINWI010000023.1 Seohaeicola saemankumensis strain IOP_23 contig23, whole genome shotgun sequence 53,771
NZ_JAINWI010000024.1 Seohaeicola saemankumensis strain IOP_23 contig24, whole genome shotgun sequence 6,201
NZ_JAINWI010000025.1 Seohaeicola saemankumensis strain IOP_23 contig25, whole genome shotgun sequence 44,466
NZ_JAINWI010000026.1 Seohaeicola saemankumensis strain IOP_23 contig26, whole genome shotgun sequence 36,190
NZ_JAINWI010000027.1 Seohaeicola saemankumensis strain IOP_23 contig27, whole genome shotgun sequence 34,158
NZ_JAINWI010000028.1 Seohaeicola saemankumensis strain IOP_23 contig28, whole genome shotgun sequence 23,096
NZ_JAINWI010000029.1 Seohaeicola saemankumensis strain IOP_23 contig29, whole genome shotgun sequence 8,580
NZ_JAINWI010000030.1 Seohaeicola saemankumensis strain IOP_23 contig30, whole genome shotgun sequence 20,463
NZ_JAINWI010000031.1 Seohaeicola saemankumensis strain IOP_23 contig31, whole genome shotgun sequence 261
NZ_JAINWI010000032.1 Seohaeicola saemankumensis strain IOP_23 contig32, whole genome shotgun sequence 457
NZ_JAINWI010000033.1 Seohaeicola saemankumensis strain IOP_23 contig33, whole genome shotgun sequence 13,527
NZ_JAINWI010000034.1 Seohaeicola saemankumensis strain IOP_23 contig34, whole genome shotgun sequence 1,071
NZ_JAINWI010000035.1 Seohaeicola saemankumensis strain IOP_23 contig35, whole genome shotgun sequence 9,070
NZ_JAINWI010000036.1 Seohaeicola saemankumensis strain IOP_23 contig36, whole genome shotgun sequence 8,331
NZ_JAINWI010000037.1 Seohaeicola saemankumensis strain IOP_23 contig37, whole genome shotgun sequence 1,053
NZ_JAINWI010000038.1 Seohaeicola saemankumensis strain IOP_23 contig38, whole genome shotgun sequence 6,484
NZ_JAINWI010000039.1 Seohaeicola saemankumensis strain IOP_23 contig39, whole genome shotgun sequence 6,754
NZ_JAINWI010000040.1 Seohaeicola saemankumensis strain IOP_23 contig40, whole genome shotgun sequence 6,154
NZ_JAINWI010000041.1 Seohaeicola saemankumensis strain IOP_23 contig41, whole genome shotgun sequence 6,030
NZ_JAINWI010000042.1 Seohaeicola saemankumensis strain IOP_23 contig42, whole genome shotgun sequence 5,736
NZ_JAINWI010000043.1 Seohaeicola saemankumensis strain IOP_23 contig43, whole genome shotgun sequence 5,713
NZ_JAINWI010000044.1 Seohaeicola saemankumensis strain IOP_23 contig44, whole genome shotgun sequence 5,287
NZ_JAINWI010000045.1 Seohaeicola saemankumensis strain IOP_23 contig45, whole genome shotgun sequence 4,879
NZ_JAINWI010000046.1 Seohaeicola saemankumensis strain IOP_23 contig46, whole genome shotgun sequence 3,744
NZ_JAINWI010000047.1 Seohaeicola saemankumensis strain IOP_23 contig47, whole genome shotgun sequence 3,173
NZ_JAINWI010000048.1 Seohaeicola saemankumensis strain IOP_23 contig48, whole genome shotgun sequence 2,896
NZ_JAINWI010000049.1 Seohaeicola saemankumensis strain IOP_23 contig49, whole genome shotgun sequence 2,748
NZ_JAINWI010000050.1 Seohaeicola saemankumensis strain IOP_23 contig50, whole genome shotgun sequence 2,504
NZ_JAINWI010000051.1 Seohaeicola saemankumensis strain IOP_23 contig51, whole genome shotgun sequence 2,069
NZ_JAINWI010000052.1 Seohaeicola saemankumensis strain IOP_23 contig52, whole genome shotgun sequence 2,068
NZ_JAINWI010000053.1 Seohaeicola saemankumensis strain IOP_23 contig53, whole genome shotgun sequence 2,031
NZ_JAINWI010000054.1 Seohaeicola saemankumensis strain IOP_23 contig54, whole genome shotgun sequence 1,933
NZ_JAINWI010000055.1 Seohaeicola saemankumensis strain IOP_23 contig55, whole genome shotgun sequence 1,692
NZ_JAINWI010000056.1 Seohaeicola saemankumensis strain IOP_23 contig56, whole genome shotgun sequence 1,305
NZ_JAINWI010000057.1 Seohaeicola saemankumensis strain IOP_23 contig57, whole genome shotgun sequence 1,254
NZ_JAINWI010000058.1 Seohaeicola saemankumensis strain IOP_23 contig58, whole genome shotgun sequence 1,211
NZ_JAINWI010000059.1 Seohaeicola saemankumensis strain IOP_23 contig59, whole genome shotgun sequence 1,199
NZ_JAINWI010000060.1 Seohaeicola saemankumensis strain IOP_23 contig60, whole genome shotgun sequence 1,160
NZ_JAINWI010000061.1 Seohaeicola saemankumensis strain IOP_23 contig61, whole genome shotgun sequence 1,146
NZ_JAINWI010000062.1 Seohaeicola saemankumensis strain IOP_23 contig62, whole genome shotgun sequence 1,085
NZ_JAINWI010000063.1 Seohaeicola saemankumensis strain IOP_23 contig63, whole genome shotgun sequence 1,078
NZ_JAINWI010000064.1 Seohaeicola saemankumensis strain IOP_23 contig64, whole genome shotgun sequence 992
NZ_JAINWI010000065.1 Seohaeicola saemankumensis strain IOP_23 contig65, whole genome shotgun sequence 885
NZ_JAINWI010000066.1 Seohaeicola saemankumensis strain IOP_23 contig66, whole genome shotgun sequence 621
NZ_JAINWI010000067.1 Seohaeicola saemankumensis strain IOP_23 contig67, whole genome shotgun sequence 210
NZ_JAINWI010000068.1 Seohaeicola saemankumensis strain IOP_23 contig68, whole genome shotgun sequence 372
NZ_JAINWI010000069.1 Seohaeicola saemankumensis strain IOP_23 contig69, whole genome shotgun sequence 522
NZ_JAINWI010000070.1 Seohaeicola saemankumensis strain IOP_23 contig70, whole genome shotgun sequence 422
NZ_JAINWI010000071.1 Seohaeicola saemankumensis strain IOP_23 contig71, whole genome shotgun sequence 407
NZ_JAINWI010000072.1 Seohaeicola saemankumensis strain IOP_23 contig72, whole genome shotgun sequence 353
NZ_JAINWI010000073.1 Seohaeicola saemankumensis strain IOP_23 contig73, whole genome shotgun sequence 343
NZ_JAINWI010000074.1 Seohaeicola saemankumensis strain IOP_23 contig74, whole genome shotgun sequence 314
NZ_JAINWI010000075.1 Seohaeicola saemankumensis strain IOP_23 contig75, whole genome shotgun sequence 253

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory