fast.genomicscompare 6,575 genera of bacteria & archaea

 

Ruminococcus_G sp022440845 OA3

Genome identifier: GCF_022440845.1

NCBI assembly name: ASM2244084v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Ruminococcus_G, Ruminococcus_G sp022440845

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Oscillospiraceae, Ruminococcus

Scaffolds: 2

Genes: 3,768 Protein-coding: 3,602 RNAs: 80 pseudogenes: 86

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAKNTO010000001.1 Ruminococcus sp. OA3 ctg.s1.000000F.arrow, whole genome shotgun sequence 4,045,533
NZ_JAKNTO010000002.1 Ruminococcus sp. OA3 ctg.s2.000023F.arrow, whole genome shotgun sequence 10,771

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory