fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pedomonas mirosovicensis A1X5R2

Genome identifier: GCF_022569295.1

NCBI assembly name: ASM2256929v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Pedomonas, Pedomonas mirosovicensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingosinicellaceae, Pedomonas, Pedomonas mirosovicensis

Scaffolds: 2

Genes: 3,343 Protein-coding: 3,139 RNAs: 70 pseudogenes: 134

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAKFIA010000001.1 Pedomonas mirosovicensis strain A1X5R2 A1X5R2_canu_contig_1, whole genome shotgun sequence 2,725,887
NZ_JAKFIA010000002.1 Pedomonas mirosovicensis strain A1X5R2 A1X5R2_canu_contig_2, whole genome shotgun sequence 905,578

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory