fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingobium_A sp022601895 LaA6.9

Genome identifier: GCF_022601895.1

NCBI assembly name: ASM2260189v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingobium_A, Sphingobium_A sp022601895

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas

Scaffolds: 95

Genes: 4,280 Protein-coding: 4,155 RNAs: 57 pseudogenes: 68

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAKVIO010000001.1 Sphingomonas sp. LaA6.9 NODE_1_length_259329_cov_314.391661, whole genome shotgun sequence 259,329
NZ_JAKVIO010000002.1 Sphingomonas sp. LaA6.9 NODE_2_length_220605_cov_307.466367, whole genome shotgun sequence 220,605
NZ_JAKVIO010000003.1 Sphingomonas sp. LaA6.9 NODE_3_length_173580_cov_389.171352, whole genome shotgun sequence 173,580
NZ_JAKVIO010000004.1 Sphingomonas sp. LaA6.9 NODE_4_length_159955_cov_405.786043, whole genome shotgun sequence 159,955
NZ_JAKVIO010000005.1 Sphingomonas sp. LaA6.9 NODE_5_length_156038_cov_437.007508, whole genome shotgun sequence 156,038
NZ_JAKVIO010000006.1 Sphingomonas sp. LaA6.9 NODE_6_length_153085_cov_329.299873, whole genome shotgun sequence 153,085
NZ_JAKVIO010000007.1 Sphingomonas sp. LaA6.9 NODE_7_length_150217_cov_366.306141, whole genome shotgun sequence 150,217
NZ_JAKVIO010000008.1 Sphingomonas sp. LaA6.9 NODE_8_length_144227_cov_362.841561, whole genome shotgun sequence 144,227
NZ_JAKVIO010000009.1 Sphingomonas sp. LaA6.9 NODE_9_length_135727_cov_356.314294, whole genome shotgun sequence 135,727
NZ_JAKVIO010000010.1 Sphingomonas sp. LaA6.9 NODE_10_length_98347_cov_414.481978, whole genome shotgun sequence 98,347
NZ_JAKVIO010000011.1 Sphingomonas sp. LaA6.9 NODE_11_length_90804_cov_299.615153, whole genome shotgun sequence 90,804
NZ_JAKVIO010000012.1 Sphingomonas sp. LaA6.9 NODE_12_length_90355_cov_340.899588, whole genome shotgun sequence 90,355
NZ_JAKVIO010000013.1 Sphingomonas sp. LaA6.9 NODE_13_length_89527_cov_302.259888, whole genome shotgun sequence 89,527
NZ_JAKVIO010000014.1 Sphingomonas sp. LaA6.9 NODE_14_length_88159_cov_327.211905, whole genome shotgun sequence 88,159
NZ_JAKVIO010000015.1 Sphingomonas sp. LaA6.9 NODE_15_length_85666_cov_346.673171, whole genome shotgun sequence 85,666
NZ_JAKVIO010000016.1 Sphingomonas sp. LaA6.9 NODE_16_length_84990_cov_333.680273, whole genome shotgun sequence 84,990
NZ_JAKVIO010000017.1 Sphingomonas sp. LaA6.9 NODE_17_length_80495_cov_320.625009, whole genome shotgun sequence 80,495
NZ_JAKVIO010000018.1 Sphingomonas sp. LaA6.9 NODE_18_length_79368_cov_409.668197, whole genome shotgun sequence 79,368
NZ_JAKVIO010000019.1 Sphingomonas sp. LaA6.9 NODE_19_length_79051_cov_373.819700, whole genome shotgun sequence 79,051
NZ_JAKVIO010000020.1 Sphingomonas sp. LaA6.9 NODE_20_length_78552_cov_430.960051, whole genome shotgun sequence 78,552
NZ_JAKVIO010000021.1 Sphingomonas sp. LaA6.9 NODE_21_length_78508_cov_383.667619, whole genome shotgun sequence 78,508
NZ_JAKVIO010000022.1 Sphingomonas sp. LaA6.9 NODE_22_length_75572_cov_382.388224, whole genome shotgun sequence 75,572
NZ_JAKVIO010000023.1 Sphingomonas sp. LaA6.9 NODE_23_length_74250_cov_397.081243, whole genome shotgun sequence 74,250
NZ_JAKVIO010000024.1 Sphingomonas sp. LaA6.9 NODE_24_length_70248_cov_419.082156, whole genome shotgun sequence 70,248
NZ_JAKVIO010000025.1 Sphingomonas sp. LaA6.9 NODE_25_length_59919_cov_363.688062, whole genome shotgun sequence 59,919
NZ_JAKVIO010000026.1 Sphingomonas sp. LaA6.9 NODE_26_length_59130_cov_396.472626, whole genome shotgun sequence 59,130
NZ_JAKVIO010000027.1 Sphingomonas sp. LaA6.9 NODE_27_length_58185_cov_399.836924, whole genome shotgun sequence 58,185
NZ_JAKVIO010000028.1 Sphingomonas sp. LaA6.9 NODE_28_length_57780_cov_318.318805, whole genome shotgun sequence 57,780
NZ_JAKVIO010000029.1 Sphingomonas sp. LaA6.9 NODE_29_length_55777_cov_420.894219, whole genome shotgun sequence 55,777
NZ_JAKVIO010000030.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_30_length_54831_cov_337.254356, whole genome shotgun sequence 54,831
NZ_JAKVIO010000031.1 Sphingomonas sp. LaA6.9 NODE_31_length_50695_cov_431.734956, whole genome shotgun sequence 50,695
NZ_JAKVIO010000032.1 Sphingomonas sp. LaA6.9 NODE_32_length_50611_cov_432.065599, whole genome shotgun sequence 50,611
NZ_JAKVIO010000033.1 Sphingomonas sp. LaA6.9 NODE_34_length_48975_cov_950.038202, whole genome shotgun sequence 48,975
NZ_JAKVIO010000034.1 Sphingomonas sp. LaA6.9 NODE_36_length_46883_cov_385.496646, whole genome shotgun sequence 46,883
NZ_JAKVIO010000035.1 Sphingomonas sp. LaA6.9 NODE_37_length_46378_cov_395.721799, whole genome shotgun sequence 46,378
NZ_JAKVIO010000036.1 Sphingomonas sp. LaA6.9 NODE_38_length_42044_cov_415.859270, whole genome shotgun sequence 42,044
NZ_JAKVIO010000037.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_39_length_40136_cov_356.559974, whole genome shotgun sequence 40,136
NZ_JAKVIO010000038.1 Sphingomonas sp. LaA6.9 NODE_40_length_38209_cov_432.634769, whole genome shotgun sequence 38,209
NZ_JAKVIO010000039.1 Sphingomonas sp. LaA6.9 NODE_41_length_37194_cov_385.680712, whole genome shotgun sequence 37,194
NZ_JAKVIO010000040.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_42_length_36544_cov_354.793265, whole genome shotgun sequence 36,544
NZ_JAKVIO010000041.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_44_length_34851_cov_346.986484, whole genome shotgun sequence 34,851
NZ_JAKVIO010000042.1 Sphingomonas sp. LaA6.9 NODE_45_length_31409_cov_364.715339, whole genome shotgun sequence 31,409
NZ_JAKVIO010000043.1 Sphingomonas sp. LaA6.9 NODE_46_length_30491_cov_450.398731, whole genome shotgun sequence 30,491
NZ_JAKVIO010000044.1 Sphingomonas sp. LaA6.9 NODE_47_length_29963_cov_405.511778, whole genome shotgun sequence 29,963
NZ_JAKVIO010000045.1 Sphingomonas sp. LaA6.9 NODE_48_length_29952_cov_435.041105, whole genome shotgun sequence 29,952
NZ_JAKVIO010000046.1 Sphingomonas sp. LaA6.9 NODE_49_length_29626_cov_323.771295, whole genome shotgun sequence 29,626
NZ_JAKVIO010000047.1 Sphingomonas sp. LaA6.9 NODE_51_length_28845_cov_379.338849, whole genome shotgun sequence 28,845
NZ_JAKVIO010000048.1 Sphingomonas sp. LaA6.9 NODE_52_length_26225_cov_363.833219, whole genome shotgun sequence 26,225
NZ_JAKVIO010000049.1 Sphingomonas sp. LaA6.9 NODE_53_length_25616_cov_319.473707, whole genome shotgun sequence 25,616
NZ_JAKVIO010000050.1 Sphingomonas sp. LaA6.9 NODE_54_length_25333_cov_380.196072, whole genome shotgun sequence 25,333
NZ_JAKVIO010000051.1 Sphingomonas sp. LaA6.9 NODE_55_length_25157_cov_389.523086, whole genome shotgun sequence 25,157
NZ_JAKVIO010000052.1 Sphingomonas sp. LaA6.9 NODE_56_length_23122_cov_317.314255, whole genome shotgun sequence 23,122
NZ_JAKVIO010000053.1 Sphingomonas sp. LaA6.9 NODE_57_length_22943_cov_301.742019, whole genome shotgun sequence 22,943
NZ_JAKVIO010000054.1 Sphingomonas sp. LaA6.9 NODE_58_length_22463_cov_325.868534, whole genome shotgun sequence 22,463
NZ_JAKVIO010000055.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_59_length_22045_cov_349.156773, whole genome shotgun sequence 22,045
NZ_JAKVIO010000056.1 Sphingomonas sp. LaA6.9 NODE_60_length_21927_cov_374.980503, whole genome shotgun sequence 21,927
NZ_JAKVIO010000057.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_61_length_21654_cov_430.528062, whole genome shotgun sequence 21,654
NZ_JAKVIO010000058.1 Sphingomonas sp. LaA6.9 NODE_62_length_21446_cov_411.926669, whole genome shotgun sequence 21,446
NZ_JAKVIO010000059.1 Sphingomonas sp. LaA6.9 NODE_63_length_21446_cov_363.736113, whole genome shotgun sequence 21,446
NZ_JAKVIO010000060.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_64_length_21290_cov_362.755103, whole genome shotgun sequence 21,290
NZ_JAKVIO010000061.1 Sphingomonas sp. LaA6.9 NODE_66_length_19084_cov_317.895775, whole genome shotgun sequence 19,084
NZ_JAKVIO010000062.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_67_length_18783_cov_348.676895, whole genome shotgun sequence 18,783
NZ_JAKVIO010000063.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_69_length_18183_cov_357.018171, whole genome shotgun sequence 18,183
NZ_JAKVIO010000064.1 Sphingomonas sp. LaA6.9 NODE_70_length_16347_cov_368.735280, whole genome shotgun sequence 16,347
NZ_JAKVIO010000065.1 Sphingomonas sp. LaA6.9 NODE_71_length_15978_cov_397.900132, whole genome shotgun sequence 15,978
NZ_JAKVIO010000066.1 Sphingomonas sp. LaA6.9 NODE_72_length_15615_cov_442.142361, whole genome shotgun sequence 15,615
NZ_JAKVIO010000067.1 Sphingomonas sp. LaA6.9 NODE_73_length_15338_cov_347.517659, whole genome shotgun sequence 15,338
NZ_JAKVIO010000068.1 Sphingomonas sp. LaA6.9 NODE_75_length_14496_cov_313.880089, whole genome shotgun sequence 14,496
NZ_JAKVIO010000069.1 Sphingomonas sp. LaA6.9 NODE_80_length_13452_cov_306.186093, whole genome shotgun sequence 13,452
NZ_JAKVIO010000070.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_81_length_12826_cov_401.392894, whole genome shotgun sequence 12,826
NZ_JAKVIO010000071.1 Sphingomonas sp. LaA6.9 NODE_85_length_11811_cov_396.207772, whole genome shotgun sequence 11,811
NZ_JAKVIO010000072.1 Sphingomonas sp. LaA6.9 NODE_98_length_9338_cov_378.101501, whole genome shotgun sequence 9,338
NZ_JAKVIO010000073.1 Sphingomonas sp. LaA6.9 NODE_110_length_8439_cov_27.483740, whole genome shotgun sequence 8,439
NZ_JAKVIO010000074.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_136_length_7039_cov_386.100833, whole genome shotgun sequence 7,039
NZ_JAKVIO010000075.1 Sphingomonas sp. LaA6.9 NODE_141_length_6855_cov_1664.376660, whole genome shotgun sequence 6,855
NZ_JAKVIO010000076.1 Sphingomonas sp. LaA6.9 NODE_142_length_6821_cov_309.170819, whole genome shotgun sequence 6,821
NZ_JAKVIO010000077.1 Sphingomonas sp. LaA6.9 NODE_146_length_6732_cov_438.675883, whole genome shotgun sequence 6,732
NZ_JAKVIO010000078.1 Sphingomonas sp. LaA6.9 NODE_152_length_6465_cov_320.531778, whole genome shotgun sequence 6,465
NZ_JAKVIO010000079.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_164_length_6031_cov_406.912496, whole genome shotgun sequence 6,031
NZ_JAKVIO010000080.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_165_length_6019_cov_346.270279, whole genome shotgun sequence 6,019
NZ_JAKVIO010000081.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_167_length_5945_cov_1677.703136, whole genome shotgun sequence 5,945
NZ_JAKVIO010000082.1 Sphingomonas sp. LaA6.9 NODE_186_length_5439_cov_315.835136, whole genome shotgun sequence 5,439
NZ_JAKVIO010000083.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_211_length_4976_cov_394.542356, whole genome shotgun sequence 4,976
NZ_JAKVIO010000084.1 Sphingomonas sp. LaA6.9 NODE_230_length_4802_cov_398.919153, whole genome shotgun sequence 4,802
NZ_JAKVIO010000085.1 Sphingomonas sp. LaA6.9 NODE_238_length_4715_cov_839.462484, whole genome shotgun sequence 4,715
NZ_JAKVIO010000086.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_259_length_4503_cov_325.418662, whole genome shotgun sequence 4,503
NZ_JAKVIO010000087.1 Sphingomonas sp. LaA6.9 NODE_273_length_4344_cov_1605.272088, whole genome shotgun sequence 4,344
NZ_JAKVIO010000088.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_334_length_3846_cov_433.481560, whole genome shotgun sequence 3,846
NZ_JAKVIO010000089.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_377_length_3563_cov_348.026648, whole genome shotgun sequence 3,563
NZ_JAKVIO010000090.1 Sphingomonas sp. LaA6.9 NODE_398_length_3467_cov_350.535988, whole genome shotgun sequence 3,467
NZ_JAKVIO010000091.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_538_length_2950_cov_425.365820, whole genome shotgun sequence 2,950
NZ_JAKVIO010000092.1 Sphingomonas sp. LaA6.9 NODE_639_length_2667_cov_431.809653, whole genome shotgun sequence 2,667
NZ_JAKVIO010000093.1 Sphingomonas sp. LaA6.9 NODE_660_length_2614_cov_344.809223, whole genome shotgun sequence 2,614
NZ_JAKVIO010000094.1 Sphingomonas sp. LaA6.9 map unlocalized plasmid unnamed NODE_789_length_2396_cov_387.124191, whole genome shotgun sequence 2,396
NZ_JAKVIO010000095.1 Sphingomonas sp. LaA6.9 NODE_864_length_2259_cov_438.604491, whole genome shotgun sequence 2,259

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory