fast.genomicscompare 6,575 genera of bacteria & archaea

 

Qipengyuania_B sp022605525 GA68

Genome identifier: GCF_022605525.1

NCBI assembly name: ASM2260552v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Qipengyuania_B, Qipengyuania_B sp022605525

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Erythrobacteraceae, Porphyrobacter

Scaffolds: 10

Genes: 2,535 Protein-coding: 2,413 RNAs: 54 pseudogenes: 68

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAKQYJ010000001.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg001, whole genome shotgun sequence 1,528,793
NZ_JAKQYJ010000002.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg002, whole genome shotgun sequence 876,749
NZ_JAKQYJ010000003.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg003, whole genome shotgun sequence 116,507
NZ_JAKQYJ010000004.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg004, whole genome shotgun sequence 7,782
NZ_JAKQYJ010000005.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg005, whole genome shotgun sequence 3,479
NZ_JAKQYJ010000006.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg006, whole genome shotgun sequence 1,819
NZ_JAKQYJ010000007.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg007, whole genome shotgun sequence 1,866
NZ_JAKQYJ010000008.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg010, whole genome shotgun sequence 1,678
NZ_JAKQYJ010000009.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg014, whole genome shotgun sequence 1,372
NZ_JAKQYJ010000010.1 Porphyrobacter sp. GA68 Erythrobacteraceae_bacterium_GA68_ctg015, whole genome shotgun sequence 1,345

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory