fast.genomicscompare 6,575 genera of bacteria & archaea

 

Aliihoeflea aestuarii JCM 15118

Genome identifier: GCF_024105665.1

NCBI assembly name: ASM2410566v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Aliihoeflea, Aliihoeflea aestuarii

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Aliihoeflea, Aliihoeflea aestuarii

Scaffolds: 25

Genes: 4,088 Protein-coding: 3,987 RNAs: 55 pseudogenes: 46

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAAAMK010000001.1 Aliihoeflea aestuarii strain JCM 15118 NODE_1, whole genome shotgun sequence 862,337
NZ_JAAAMK010000002.1 Aliihoeflea aestuarii strain JCM 15118 NODE_2, whole genome shotgun sequence 669,447
NZ_JAAAMK010000003.1 Aliihoeflea aestuarii strain JCM 15118 NODE_3, whole genome shotgun sequence 564,003
NZ_JAAAMK010000004.1 Aliihoeflea aestuarii strain JCM 15118 NODE_4, whole genome shotgun sequence 295,486
NZ_JAAAMK010000005.1 Aliihoeflea aestuarii strain JCM 15118 NODE_5, whole genome shotgun sequence 238,795
NZ_JAAAMK010000006.1 Aliihoeflea aestuarii strain JCM 15118 NODE_6, whole genome shotgun sequence 215,306
NZ_JAAAMK010000007.1 Aliihoeflea aestuarii strain JCM 15118 NODE_7, whole genome shotgun sequence 215,045
NZ_JAAAMK010000008.1 Aliihoeflea aestuarii strain JCM 15118 NODE_8, whole genome shotgun sequence 198,300
NZ_JAAAMK010000009.1 Aliihoeflea aestuarii strain JCM 15118 NODE_9, whole genome shotgun sequence 162,527
NZ_JAAAMK010000010.1 Aliihoeflea aestuarii strain JCM 15118 NODE_10, whole genome shotgun sequence 115,208
NZ_JAAAMK010000011.1 Aliihoeflea aestuarii strain JCM 15118 NODE_11, whole genome shotgun sequence 112,318
NZ_JAAAMK010000012.1 Aliihoeflea aestuarii strain JCM 15118 NODE_12, whole genome shotgun sequence 99,247
NZ_JAAAMK010000013.1 Aliihoeflea aestuarii strain JCM 15118 NODE_13, whole genome shotgun sequence 78,767
NZ_JAAAMK010000014.1 Aliihoeflea aestuarii strain JCM 15118 NODE_14, whole genome shotgun sequence 70,699
NZ_JAAAMK010000015.1 Aliihoeflea aestuarii strain JCM 15118 NODE_15, whole genome shotgun sequence 42,921
NZ_JAAAMK010000016.1 Aliihoeflea aestuarii strain JCM 15118 NODE_16, whole genome shotgun sequence 42,877
NZ_JAAAMK010000017.1 Aliihoeflea aestuarii strain JCM 15118 NODE_17, whole genome shotgun sequence 42,034
NZ_JAAAMK010000018.1 Aliihoeflea aestuarii strain JCM 15118 NODE_18, whole genome shotgun sequence 37,485
NZ_JAAAMK010000019.1 Aliihoeflea aestuarii strain JCM 15118 NODE_19, whole genome shotgun sequence 28,662
NZ_JAAAMK010000020.1 Aliihoeflea aestuarii strain JCM 15118 NODE_20, whole genome shotgun sequence 13,949
NZ_JAAAMK010000021.1 Aliihoeflea aestuarii strain JCM 15118 NODE_21, whole genome shotgun sequence 6,364
NZ_JAAAMK010000022.1 Aliihoeflea aestuarii strain JCM 15118 NODE_22, whole genome shotgun sequence 1,490
NZ_JAAAMK010000023.1 Aliihoeflea aestuarii strain JCM 15118 NODE_23, whole genome shotgun sequence 1,085
NZ_JAAAMK010000024.1 Aliihoeflea aestuarii strain JCM 15118 NODE_24, whole genome shotgun sequence 944
NZ_JAAAMK010000025.1 Aliihoeflea aestuarii strain JCM 15118 NODE_25, whole genome shotgun sequence 737

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory