fast.genomicscompare 6,575 genera of bacteria & archaea

 

JANFMV01 sp024385575 NRK18

Genome identifier: GCF_024385575.1

NCBI assembly name: ASM2438557v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, JANFMV01, JANFMV01 sp024385575

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae, Rhizobium

Scaffolds: 5

Genes: 4,290 Protein-coding: 4,219 RNAs: 53 pseudogenes: 18

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JANFMV010000001.1 Rhizobium sp. NRK18 Scaffold_1, whole genome shotgun sequence 4,063,999
NZ_JANFMV010000002.1 Rhizobium sp. NRK18 Scaffold_12, whole genome shotgun sequence 334
NZ_JANFMV010000003.1 Rhizobium sp. NRK18 Scaffold_13, whole genome shotgun sequence 313
NZ_JANFMV010000004.1 Rhizobium sp. NRK18 scaffold_14, whole genome shotgun sequence 347,943
NZ_JANFMV010000005.1 Rhizobium sp. NRK18 scaffold_15, whole genome shotgun sequence 132,439

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory