fast.genomicscompare 6,575 genera of bacteria & archaea

 

SLM-1 sp024723735 ROC022

Genome identifier: GCF_024723735.1

NCBI assembly name: ASM2472373v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, SLM-1, SLM-1 sp024723735

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Frigidibacter

Scaffolds: 21

Genes: 4,267 Protein-coding: 4,195 RNAs: 49 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JANQDU010000001.1 Frigidibacter sp. ROC022 1, whole genome shotgun sequence 1,372,380
NZ_JANQDU010000002.1 Frigidibacter sp. ROC022 2, whole genome shotgun sequence 1,018,819
NZ_JANQDU010000003.1 Frigidibacter sp. ROC022 3, whole genome shotgun sequence 886,492
NZ_JANQDU010000004.1 Frigidibacter sp. ROC022 4, whole genome shotgun sequence 494,585
NZ_JANQDU010000005.1 Frigidibacter sp. ROC022 5, whole genome shotgun sequence 245,961
NZ_JANQDU010000006.1 Frigidibacter sp. ROC022 6, whole genome shotgun sequence 123,598
NZ_JANQDU010000007.1 Frigidibacter sp. ROC022 7, whole genome shotgun sequence 79,246
NZ_JANQDU010000008.1 Frigidibacter sp. ROC022 8, whole genome shotgun sequence 35,079
NZ_JANQDU010000009.1 Frigidibacter sp. ROC022 9, whole genome shotgun sequence 34,940
NZ_JANQDU010000010.1 Frigidibacter sp. ROC022 10, whole genome shotgun sequence 33,795
NZ_JANQDU010000011.1 Frigidibacter sp. ROC022 11, whole genome shotgun sequence 26,311
NZ_JANQDU010000012.1 Frigidibacter sp. ROC022 12, whole genome shotgun sequence 24,389
NZ_JANQDU010000013.1 Frigidibacter sp. ROC022 13, whole genome shotgun sequence 12,914
NZ_JANQDU010000014.1 Frigidibacter sp. ROC022 14, whole genome shotgun sequence 2,997
NZ_JANQDU010000015.1 Frigidibacter sp. ROC022 15, whole genome shotgun sequence 2,987
NZ_JANQDU010000016.1 Frigidibacter sp. ROC022 16, whole genome shotgun sequence 1,187
NZ_JANQDU010000017.1 Frigidibacter sp. ROC022 17, whole genome shotgun sequence 1,051
NZ_JANQDU010000018.1 Frigidibacter sp. ROC022 18, whole genome shotgun sequence 1,003
NZ_JANQDU010000019.1 Frigidibacter sp. ROC022 19, whole genome shotgun sequence 813
NZ_JANQDU010000020.1 Frigidibacter sp. ROC022 20, whole genome shotgun sequence 750
NZ_JANQDU010000021.1 Frigidibacter sp. ROC022 21, whole genome shotgun sequence 644

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory