fast.genomicscompare 6,575 genera of bacteria & archaea

 

Litorirhabdus singularis IMCC14734

Genome identifier: GCF_026262625.1

NCBI assembly name: ASM2626262v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Halieaceae, Litorirhabdus, Litorirhabdus singularis

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Halieaceae, Candidatus Litorirhabdus, Candidatus Litorirhabdus singularis

Scaffolds: 20

Genes: 4,333 Protein-coding: 4,260 RNAs: 47 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SHNN01000001.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_1, whole genome shotgun sequence 1,895,525
NZ_SHNN01000002.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_2, whole genome shotgun sequence 1,315,042
NZ_SHNN01000003.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_3, whole genome shotgun sequence 600,910
NZ_SHNN01000004.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_4, whole genome shotgun sequence 388,444
NZ_SHNN01000005.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_5, whole genome shotgun sequence 286,984
NZ_SHNN01000006.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_6, whole genome shotgun sequence 159,048
NZ_SHNN01000007.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_7, whole genome shotgun sequence 122,433
NZ_SHNN01000008.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_8, whole genome shotgun sequence 33,764
NZ_SHNN01000009.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_9, whole genome shotgun sequence 9,013
NZ_SHNN01000010.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_10, whole genome shotgun sequence 5,798
NZ_SHNN01000011.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_11, whole genome shotgun sequence 5,557
NZ_SHNN01000012.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_12, whole genome shotgun sequence 3,144
NZ_SHNN01000013.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_13, whole genome shotgun sequence 1,884
NZ_SHNN01000014.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_14, whole genome shotgun sequence 1,881
NZ_SHNN01000015.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_15, whole genome shotgun sequence 1,674
NZ_SHNN01000016.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_16, whole genome shotgun sequence 1,619
NZ_SHNN01000017.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_17, whole genome shotgun sequence 1,305
NZ_SHNN01000018.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_19, whole genome shotgun sequence 916
NZ_SHNN01000019.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_28, whole genome shotgun sequence 707
NZ_SHNN01000020.1 Candidatus Litorirhabdus singularis strain IMCC14734 NODE_292, whole genome shotgun sequence 280

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory