fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudokordiimonas caeni LB-31

Genome identifier: GCF_026719705.1

NCBI assembly name: ASM2671970v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Kordiimonadaceae, Pseudokordiimonas, Pseudokordiimonas caeni

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Kordiimonadales, Kordiimonadaceae, Pseudokordiimonas, Pseudokordiimonas caeni

Scaffolds: 6

Genes: 3,272 Protein-coding: 3,216 RNAs: 50 pseudogenes: 6

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAPPRR010000001.1 Pseudokordiimonas caeni strain LB-31 LB-31_scaffold1, whole genome shotgun sequence 1,921,530
NZ_JAPPRR010000002.1 Pseudokordiimonas caeni strain LB-31 LB-31_scaffold2, whole genome shotgun sequence 935,738
NZ_JAPPRR010000003.1 Pseudokordiimonas caeni strain LB-31 LB-31_scaffold3, whole genome shotgun sequence 362,474
NZ_JAPPRR010000004.1 Pseudokordiimonas caeni strain LB-31 LB-31_scaffold4, whole genome shotgun sequence 319,321
NZ_JAPPRR010000005.1 Pseudokordiimonas caeni strain LB-31 LB-31_scaffold5, whole genome shotgun sequence 5,201
NZ_JAPPRR010000006.1 Pseudokordiimonas caeni strain LB-31 LB-31_scaffold6, whole genome shotgun sequence 1,088

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory