fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingomonas_Q naphthae KACC 18716

Genome identifier: GCF_028607085.1

NCBI assembly name: ASM2860708v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas_Q, Sphingomonas_Q naphthae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas, Sphingomonas naphthae

Scaffolds: 5

Genes: 4,199 Protein-coding: 4,109 RNAs: 56 pseudogenes: 34

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP117411.1 Sphingomonas naphthae strain KACC 18716 chromosome, complete genome 3,919,827
NZ_CP117412.1 Sphingomonas naphthae strain KACC 18716 plasmid unnamed1, complete sequence 185,404
NZ_CP117413.1 Sphingomonas naphthae strain KACC 18716 plasmid unnamed2, complete sequence 131,261
NZ_CP117414.1 Sphingomonas naphthae strain KACC 18716 plasmid unnamed3, complete sequence 50,217
NZ_CP117415.1 Sphingomonas naphthae strain KACC 18716 plasmid unnamed4, complete sequence 24,142

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory