fast.genomicscompare 6,575 genera of bacteria & archaea

 

Mesorhizobium_I shangrilense 1W2

Genome identifier: GCF_028826155.1

NCBI assembly name: ASM2882615v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Mesorhizobium_I, Mesorhizobium_I shangrilense

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Mesorhizobium, Mesorhizobium shangrilense

Scaffolds: 5

Genes: 5,373 Protein-coding: 5,243 RNAs: 59 pseudogenes: 71

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAQGPN010000001.1 Mesorhizobium shangrilense strain 1W2 contig.1.cir, whole genome shotgun sequence 4,816,668
NZ_JAQGPN010000002.1 Mesorhizobium shangrilense strain 1W2 contig.2.cir, whole genome shotgun sequence 231,233
NZ_JAQGPN010000003.1 Mesorhizobium shangrilense strain 1W2 contig.3.cir, whole genome shotgun sequence 197,998
NZ_JAQGPN010000004.1 Mesorhizobium shangrilense strain 1W2 contig.4.cir, whole genome shotgun sequence 163,932
NZ_JAQGPN010000005.1 Mesorhizobium shangrilense strain 1W2 contig.5.cir, whole genome shotgun sequence 135,695

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory