fast.genomicscompare 6,575 genera of bacteria & archaea

 

Defluviimonas nitratireducens MCCC 1A06955

Genome identifier: GCF_029210495.1

NCBI assembly name: ASM2921049v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Defluviimonas, Defluviimonas nitratireducens

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Defluviimonas, Defluviimonas nitratireducens

Scaffolds: 44

Genes: 3,025 Protein-coding: 2,946 RNAs: 50 pseudogenes: 29

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JARGDK010000001.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_1_length_457931_cov_236.266919, whole genome shotgun sequence 457,931
NZ_JARGDK010000002.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_2_length_362245_cov_227.650629, whole genome shotgun sequence 362,245
NZ_JARGDK010000003.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_3_length_329378_cov_244.054239, whole genome shotgun sequence 329,378
NZ_JARGDK010000004.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_4_length_309771_cov_225.804982, whole genome shotgun sequence 309,771
NZ_JARGDK010000005.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_5_length_282620_cov_244.462227, whole genome shotgun sequence 282,620
NZ_JARGDK010000006.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_6_length_193709_cov_216.308596, whole genome shotgun sequence 193,709
NZ_JARGDK010000007.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_7_length_190264_cov_241.006352, whole genome shotgun sequence 190,264
NZ_JARGDK010000008.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_8_length_115728_cov_232.736768, whole genome shotgun sequence 115,728
NZ_JARGDK010000009.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_9_length_114143_cov_230.770054, whole genome shotgun sequence 114,143
NZ_JARGDK010000010.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_10_length_105225_cov_219.139242, whole genome shotgun sequence 105,225
NZ_JARGDK010000011.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_11_length_90007_cov_220.388424, whole genome shotgun sequence 90,007
NZ_JARGDK010000012.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_12_length_84730_cov_237.743943, whole genome shotgun sequence 84,730
NZ_JARGDK010000013.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_13_length_84222_cov_219.314861, whole genome shotgun sequence 84,222
NZ_JARGDK010000014.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_14_length_83625_cov_211.569768, whole genome shotgun sequence 83,625
NZ_JARGDK010000015.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_15_length_37394_cov_245.459174, whole genome shotgun sequence 37,394
NZ_JARGDK010000016.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_16_length_35458_cov_213.003533, whole genome shotgun sequence 35,458
NZ_JARGDK010000017.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_17_length_29542_cov_227.097370, whole genome shotgun sequence 29,542
NZ_JARGDK010000018.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_18_length_26459_cov_211.801380, whole genome shotgun sequence 26,459
NZ_JARGDK010000019.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_19_length_16847_cov_225.148539, whole genome shotgun sequence 16,847
NZ_JARGDK010000020.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_20_length_7342_cov_212.182657, whole genome shotgun sequence 7,342
NZ_JARGDK010000021.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_21_length_5443_cov_418.820164, whole genome shotgun sequence 5,443
NZ_JARGDK010000022.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_22_length_5068_cov_206.101382, whole genome shotgun sequence 5,068
NZ_JARGDK010000023.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_23_length_5011_cov_221.571139, whole genome shotgun sequence 5,011
NZ_JARGDK010000024.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_24_length_4492_cov_215.333635, whole genome shotgun sequence 4,492
NZ_JARGDK010000025.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_25_length_4445_cov_223.111722, whole genome shotgun sequence 4,445
NZ_JARGDK010000026.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_26_length_3724_cov_229.840691, whole genome shotgun sequence 3,724
NZ_JARGDK010000027.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_27_length_2369_cov_205.412304, whole genome shotgun sequence 2,369
NZ_JARGDK010000028.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_28_length_2053_cov_444.668016, whole genome shotgun sequence 2,053
NZ_JARGDK010000029.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_29_length_1791_cov_444.225788, whole genome shotgun sequence 1,791
NZ_JARGDK010000030.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_30_length_1629_cov_218.346649, whole genome shotgun sequence 1,629
NZ_JARGDK010000031.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_31_length_1378_cov_3538.387394, whole genome shotgun sequence 1,378
NZ_JARGDK010000032.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_32_length_1304_cov_230.570497, whole genome shotgun sequence 1,304
NZ_JARGDK010000033.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_33_length_1191_cov_220.718133, whole genome shotgun sequence 1,191
NZ_JARGDK010000034.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_34_length_1177_cov_495.164545, whole genome shotgun sequence 1,177
NZ_JARGDK010000035.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_35_length_1124_cov_224.618911, whole genome shotgun sequence 1,124
NZ_JARGDK010000036.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_36_length_1103_cov_450.173489, whole genome shotgun sequence 1,103
NZ_JARGDK010000037.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_37_length_1046_cov_344.178535, whole genome shotgun sequence 1,046
NZ_JARGDK010000038.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_38_length_928_cov_446.048179, whole genome shotgun sequence 928
NZ_JARGDK010000039.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_39_length_909_cov_463.972356, whole genome shotgun sequence 909
NZ_JARGDK010000040.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_41_length_753_cov_245.952663, whole genome shotgun sequence 753
NZ_JARGDK010000041.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_42_length_753_cov_221.727811, whole genome shotgun sequence 753
NZ_JARGDK010000042.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_43_length_720_cov_225.732504, whole genome shotgun sequence 720
NZ_JARGDK010000043.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_45_length_653_cov_215.644097, whole genome shotgun sequence 653
NZ_JARGDK010000044.1 Defluviimonas nitratireducens strain MCCC 1A06955 NODE_46_length_564_cov_479.394251, whole genome shotgun sequence 564

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory