fast.genomicscompare 6,575 genera of bacteria & archaea

 

DFXE01 sp029892785 PH5-46

Genome identifier: GCF_029892785.1

NCBI assembly name: ASM2989278v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Tannerellaceae, DFXE01, DFXE01 sp029892785

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Tannerellaceae, Parabacteroides

Scaffolds: 39

Genes: 3,685 Protein-coding: 3,580 RNAs: 59 pseudogenes: 46

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JARXXA010000001.1 Parabacteroides sp. PH5-46 Ga0505210_01, whole genome shotgun sequence 465,762
NZ_JARXXA010000002.1 Parabacteroides sp. PH5-46 Ga0505210_02, whole genome shotgun sequence 399,744
NZ_JARXXA010000003.1 Parabacteroides sp. PH5-46 Ga0505210_03, whole genome shotgun sequence 370,868
NZ_JARXXA010000004.1 Parabacteroides sp. PH5-46 Ga0505210_04, whole genome shotgun sequence 344,764
NZ_JARXXA010000005.1 Parabacteroides sp. PH5-46 Ga0505210_05, whole genome shotgun sequence 308,304
NZ_JARXXA010000006.1 Parabacteroides sp. PH5-46 Ga0505210_06, whole genome shotgun sequence 296,142
NZ_JARXXA010000007.1 Parabacteroides sp. PH5-46 Ga0505210_07, whole genome shotgun sequence 199,299
NZ_JARXXA010000008.1 Parabacteroides sp. PH5-46 Ga0505210_08, whole genome shotgun sequence 192,221
NZ_JARXXA010000009.1 Parabacteroides sp. PH5-46 Ga0505210_09, whole genome shotgun sequence 173,440
NZ_JARXXA010000010.1 Parabacteroides sp. PH5-46 Ga0505210_10, whole genome shotgun sequence 171,863
NZ_JARXXA010000011.1 Parabacteroides sp. PH5-46 Ga0505210_11, whole genome shotgun sequence 148,157
NZ_JARXXA010000012.1 Parabacteroides sp. PH5-46 Ga0505210_12, whole genome shotgun sequence 144,321
NZ_JARXXA010000013.1 Parabacteroides sp. PH5-46 Ga0505210_13, whole genome shotgun sequence 122,392
NZ_JARXXA010000014.1 Parabacteroides sp. PH5-46 Ga0505210_14, whole genome shotgun sequence 121,390
NZ_JARXXA010000015.1 Parabacteroides sp. PH5-46 Ga0505210_15, whole genome shotgun sequence 102,394
NZ_JARXXA010000016.1 Parabacteroides sp. PH5-46 Ga0505210_16, whole genome shotgun sequence 98,371
NZ_JARXXA010000017.1 Parabacteroides sp. PH5-46 Ga0505210_17, whole genome shotgun sequence 86,440
NZ_JARXXA010000018.1 Parabacteroides sp. PH5-46 Ga0505210_18, whole genome shotgun sequence 85,568
NZ_JARXXA010000019.1 Parabacteroides sp. PH5-46 Ga0505210_19, whole genome shotgun sequence 84,190
NZ_JARXXA010000020.1 Parabacteroides sp. PH5-46 Ga0505210_20, whole genome shotgun sequence 83,640
NZ_JARXXA010000021.1 Parabacteroides sp. PH5-46 Ga0505210_21, whole genome shotgun sequence 64,517
NZ_JARXXA010000022.1 Parabacteroides sp. PH5-46 Ga0505210_22, whole genome shotgun sequence 63,055
NZ_JARXXA010000023.1 Parabacteroides sp. PH5-46 Ga0505210_23, whole genome shotgun sequence 51,485
NZ_JARXXA010000024.1 Parabacteroides sp. PH5-46 Ga0505210_24, whole genome shotgun sequence 48,384
NZ_JARXXA010000025.1 Parabacteroides sp. PH5-46 Ga0505210_25, whole genome shotgun sequence 43,534
NZ_JARXXA010000026.1 Parabacteroides sp. PH5-46 Ga0505210_26, whole genome shotgun sequence 37,575
NZ_JARXXA010000027.1 Parabacteroides sp. PH5-46 Ga0505210_27, whole genome shotgun sequence 32,872
NZ_JARXXA010000028.1 Parabacteroides sp. PH5-46 Ga0505210_28, whole genome shotgun sequence 23,533
NZ_JARXXA010000029.1 Parabacteroides sp. PH5-46 Ga0505210_29, whole genome shotgun sequence 20,200
NZ_JARXXA010000030.1 Parabacteroides sp. PH5-46 Ga0505210_30, whole genome shotgun sequence 12,269
NZ_JARXXA010000031.1 Parabacteroides sp. PH5-46 Ga0505210_31, whole genome shotgun sequence 7,601
NZ_JARXXA010000032.1 Parabacteroides sp. PH5-46 Ga0505210_32, whole genome shotgun sequence 3,100
NZ_JARXXA010000033.1 Parabacteroides sp. PH5-46 Ga0505210_33, whole genome shotgun sequence 2,776
NZ_JARXXA010000034.1 Parabacteroides sp. PH5-46 Ga0505210_34, whole genome shotgun sequence 2,491
NZ_JARXXA010000035.1 Parabacteroides sp. PH5-46 Ga0505210_35, whole genome shotgun sequence 2,140
NZ_JARXXA010000036.1 Parabacteroides sp. PH5-46 Ga0505210_36, whole genome shotgun sequence 2,080
NZ_JARXXA010000037.1 Parabacteroides sp. PH5-46 Ga0505210_37, whole genome shotgun sequence 1,861
NZ_JARXXA010000038.1 Parabacteroides sp. PH5-46 Ga0505210_38, whole genome shotgun sequence 1,799
NZ_JARXXA010000039.1 Parabacteroides sp. PH5-46 Ga0505210_39, whole genome shotgun sequence 1,439

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory