fast.genomicscompare 6,575 genera of bacteria & archaea

 

JASCQG01 sp030005555 DT-LB-19

Genome identifier: GCF_030005555.1

NCBI assembly name: ASM3000555v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Weeksellaceae, JASCQG01, JASCQG01 sp030005555

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Weeksellaceae, Chishuiella

Scaffolds: 45

Genes: 3,167 Protein-coding: 3,080 RNAs: 72 pseudogenes: 15

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JASCQG010000001.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold1, whole genome shotgun sequence 424,216
NZ_JASCQG010000002.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold2, whole genome shotgun sequence 321,450
NZ_JASCQG010000003.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold3, whole genome shotgun sequence 269,391
NZ_JASCQG010000004.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold4, whole genome shotgun sequence 240,814
NZ_JASCQG010000005.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold5, whole genome shotgun sequence 176,508
NZ_JASCQG010000006.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold6, whole genome shotgun sequence 170,062
NZ_JASCQG010000007.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold7, whole genome shotgun sequence 163,026
NZ_JASCQG010000008.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold8, whole genome shotgun sequence 162,649
NZ_JASCQG010000009.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold9, whole genome shotgun sequence 161,970
NZ_JASCQG010000010.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold10, whole genome shotgun sequence 159,886
NZ_JASCQG010000011.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold11, whole genome shotgun sequence 158,895
NZ_JASCQG010000012.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold12, whole genome shotgun sequence 150,084
NZ_JASCQG010000013.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold13, whole genome shotgun sequence 112,336
NZ_JASCQG010000014.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold14, whole genome shotgun sequence 104,604
NZ_JASCQG010000015.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold15, whole genome shotgun sequence 74,844
NZ_JASCQG010000016.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold16, whole genome shotgun sequence 59,365
NZ_JASCQG010000017.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold17, whole genome shotgun sequence 47,820
NZ_JASCQG010000018.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold18, whole genome shotgun sequence 42,649
NZ_JASCQG010000019.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold19, whole genome shotgun sequence 33,949
NZ_JASCQG010000020.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold20, whole genome shotgun sequence 33,856
NZ_JASCQG010000021.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold21, whole genome shotgun sequence 26,210
NZ_JASCQG010000022.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold22, whole genome shotgun sequence 22,552
NZ_JASCQG010000023.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold23, whole genome shotgun sequence 18,983
NZ_JASCQG010000024.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold24, whole genome shotgun sequence 17,656
NZ_JASCQG010000025.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold25, whole genome shotgun sequence 15,302
NZ_JASCQG010000026.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold26, whole genome shotgun sequence 14,617
NZ_JASCQG010000027.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold27, whole genome shotgun sequence 12,601
NZ_JASCQG010000028.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold28, whole genome shotgun sequence 11,408
NZ_JASCQG010000029.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold29, whole genome shotgun sequence 5,702
NZ_JASCQG010000030.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold30, whole genome shotgun sequence 5,020
NZ_JASCQG010000031.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold31, whole genome shotgun sequence 4,985
NZ_JASCQG010000032.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold32, whole genome shotgun sequence 4,573
NZ_JASCQG010000033.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold33, whole genome shotgun sequence 3,800
NZ_JASCQG010000034.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold34, whole genome shotgun sequence 3,389
NZ_JASCQG010000035.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold35, whole genome shotgun sequence 2,861
NZ_JASCQG010000036.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold36, whole genome shotgun sequence 2,227
NZ_JASCQG010000037.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold37, whole genome shotgun sequence 1,958
NZ_JASCQG010000038.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold38, whole genome shotgun sequence 1,602
NZ_JASCQG010000039.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold39, whole genome shotgun sequence 1,592
NZ_JASCQG010000040.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold40, whole genome shotgun sequence 1,578
NZ_JASCQG010000041.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold41, whole genome shotgun sequence 1,491
NZ_JASCQG010000042.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold42, whole genome shotgun sequence 935
NZ_JASCQG010000043.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold43, whole genome shotgun sequence 781
NZ_JASCQG010000044.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold44, whole genome shotgun sequence 661
NZ_JASCQG010000045.1 Empedobacter sedimenti strain DT-LB-19 DL19_scaffold45, whole genome shotgun sequence 659

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory